Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.6e-144 516.2 268 100.0
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.5e-104 382.1 236 86.0
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 4.3e-102 375.2 236 84.7
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 9.5e-102 374.0 236 83.1
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.1e-101 372.9 238 83.2
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 2.1e-101 372.9 236 83.5
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 8.1e-101 370.9 236 83.5
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 1.1e-100 370.5 249 79.1
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 1.4e-100 370.2 236 81.4
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.4e-100 369.4 236 82.6
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 3.1e-100 369.0 236 82.2
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 3.1e-100 369.0 236 82.2
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 4.0e-100 368.6 236 81.8
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 5.2e-100 368.2 236 82.6
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 5.2e-100 368.2 236 80.5
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 6.8e-100 367.9 236 80.5
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 6.8e-100 367.9 249 78.7
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.2e-99 367.1 236 81.8
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 1.5e-99 366.7 236 80.9
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.5e-99 366.7 236 82.6
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 2.0e-99 366.3 236 80.9
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 2.0e-99 366.3 236 80.5
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 2.0e-99 366.3 236 81.4
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 2.0e-99 366.3 236 82.2
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.6e-99 365.9 238 81.9
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 2.6e-99 365.9 236 82.2
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 2.6e-99 365.9 236 82.2
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 3.4e-99 365.5 236 80.9
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.4e-99 365.5 236 81.4
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 3.4e-99 365.5 236 81.4
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 3.4e-99 365.5 236 80.9
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 3.4e-99 365.5 236 80.5
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 3.4e-99 365.5 236 80.5
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 4.4e-99 365.2 236 80.9
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 4.4e-99 365.2 236 80.1
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 5.8e-99 364.8 236 80.1
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 5.8e-99 364.8 236 81.4
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 5.8e-99 364.8 236 82.2
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 7.6e-99 364.4 236 81.4
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 7.6e-99 364.4 236 80.1
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 7.6e-99 364.4 236 81.8
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 9.9e-99 364.0 236 81.4
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.3e-98 363.6 236 80.9
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.3e-98 363.6 236 80.9
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.3e-98 363.6 236 80.5
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.3e-98 363.6 236 80.5
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.7e-98 363.2 236 79.7
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.7e-98 363.2 236 79.7
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 1.7e-98 363.2 236 81.8
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.7e-98 363.2 236 81.4
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 1.7e-98 363.2 236 80.9
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 2.2e-98 362.8 236 80.1
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.2e-98 362.8 236 80.9
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 2.2e-98 362.8 236 80.9
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 2.9e-98 362.5 236 80.1
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.8e-98 362.1 236 80.9
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.8e-98 362.1 236 80.9
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 4.9e-98 361.7 236 80.9
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 4.9e-98 361.7 236 79.7
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 6.4e-98 361.3 236 79.7
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 6.4e-98 361.3 236 80.5
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 6.4e-98 361.3 236 81.4
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 6.4e-98 361.3 236 80.5
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 6.4e-98 361.3 236 81.4
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 8.4e-98 360.9 236 80.1
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 1.1e-97 360.5 236 80.5
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.1e-97 360.5 236 80.1
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 1.4e-97 360.1 236 80.9
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.4e-97 360.1 236 80.9
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.4e-97 360.1 236 80.9
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.4e-97 359.4 236 80.5
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.4e-97 359.4 236 79.7
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 2.4e-97 359.4 236 80.9
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 3.2e-97 359.0 236 80.9
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 3.2e-97 359.0 241 80.5
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 4.2e-97 358.6 236 78.8
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 7.1e-97 357.8 236 80.1
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 7.1e-97 357.8 236 80.5
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.2e-96 357.1 236 79.7
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 1.6e-96 356.7 236 79.2
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.6e-96 356.7 236 80.1
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 2.1e-96 356.3 236 78.8
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 2.7e-96 355.9 236 79.2
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 3.5e-96 355.5 236 79.7
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.6e-96 355.1 236 79.7
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 6.0e-96 354.8 236 78.8
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 7.8e-96 354.4 236 80.1
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 7.8e-96 354.4 236 78.4
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 1.0e-95 354.0 236 78.4
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 1.0e-95 354.0 232 78.9
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.0e-95 354.0 236 79.7
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.0e-95 354.0 236 79.7
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 1.3e-95 353.6 236 79.2
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.3e-95 353.6 236 80.1
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 2.3e-95 352.8 236 79.7
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 3.9e-95 352.1 236 78.4
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 5.1e-95 351.7 236 78.8
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 6.6e-95 351.3 236 78.4
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 6.6e-95 351.3 236 78.4
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 6.6e-95 351.3 236 78.4
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 6.6e-95 351.3 236 78.4
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 6.6e-95 351.3 236 78.4
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 8.7e-95 350.9 236 78.4
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 1.1e-94 350.5 236 78.4
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.1e-94 350.5 236 76.7
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.5e-94 350.1 236 78.8
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 1.9e-94 349.7 236 78.4
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 2.5e-94 349.4 236 78.8
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 3.3e-94 349.0 242 76.4
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 4.3e-94 348.6 236 76.3
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 5.6e-94 348.2 236 78.4
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 5.6e-94 348.2 236 77.5
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 7.3e-94 347.8 236 78.0
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 7.3e-94 347.8 249 74.3
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.2e-93 347.1 236 77.5
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.2e-93 347.1 236 77.5
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 1.2e-93 347.1 236 77.5
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 1.2e-93 347.1 236 77.5
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.2e-93 347.1 236 77.5
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.2e-93 347.1 236 78.4
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.6e-93 346.7 274 69.3
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 2.8e-93 345.9 236 75.8
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 3.6e-93 345.5 236 77.1
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 4.7e-93 345.1 236 75.0
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 4.7e-93 345.1 236 76.3
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.4e-92 342.8 236 74.6
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 3.1e-92 342.4 237 75.1
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 3.4e-91 339.0 236 74.6
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 2.9e-90 335.9 242 74.0
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 1.4e-89 333.6 236 73.7
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 5.4e-89 331.6 236 74.6
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 1.6e-88 330.1 236 73.7
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 7.3e-86 321.2 241 73.0
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.3e-85 320.5 234 76.1
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 1.6e-85 320.1 233 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 1.8e-84 316.6 250 67.6
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 2.6e-83 312.8 222 73.9
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 2.6e-83 312.8 234 70.9
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 2.6e-83 312.8 234 71.4
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 6.7e-79 298.1 204 77.9
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.2e-75 287.3 236 68.6
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 4.2e-73 278.9 228 68.0
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 3.9e-71 272.3 236 59.7
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.1e-70 270.8 193 74.1
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 9.0e-68 261.2 238 57.6
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 1.0e-66 257.7 233 58.8
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 2.2e-61 240.0 227 60.4
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.4e-51 206.1 152 71.1
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 8.8e-47 191.4 124 79.0
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 2.0e-46 190.3 121 78.5
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 7.4e-46 188.3 160 70.0
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 6.3e-45 185.3 113 78.8
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.6e-43 179.9 207 57.0
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 1.1e-36 157.9 110 73.6
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 7.0e-36 155.2 100 77.0
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 1.7e-34 150.6 151 51.0
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 6.8e-31 138.7 95 74.7
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 9.7e-30 134.8 74 91.9
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 2.0e-27 127.1 146 55.5
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 5.0e-26 122.5 70 84.3
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 3.6e-24 116.3 148 48.6
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.4e-23 114.4 65 86.2
Lsat_1_v5_gn_2_39580 Lactuca sativa HOM05D003693 ORTHO05D004698 5.9e-19 99.0 58 82.8
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 2.3e-15 87.0 74 60.8
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 5.2e-15 85.9 78 59.0
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 1.5e-09 67.8 46 73.9
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 2.5e-09 67.0 35 88.6


User provided reference genes

Program Settings