Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 3.0e-103 378.6 208 100.0
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 6.3e-85 317.8 206 83.5
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.1e-48 196.4 224 53.1
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 6.8e-47 191.4 213 53.1
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 2.4e-44 183.0 179 64.8
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 2.7e-43 179.5 170 57.1
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.7e-43 179.5 207 58.5
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.5e-41 172.9 221 46.6
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 7.3e-41 171.4 216 50.5
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 2.1e-40 169.9 196 53.6
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 2.1e-40 169.9 206 47.6
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.6e-40 169.1 214 49.5
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 6.2e-40 168.3 214 49.1
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 1.1e-39 167.5 214 54.2
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 1.4e-39 167.2 214 48.6
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 2.3e-39 166.4 214 54.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.3e-39 166.4 238 49.6
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.0e-39 165.6 214 48.6
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.2e-38 164.1 224 46.9
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.0e-38 163.3 224 50.0
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 5.8e-38 161.8 167 52.7
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 5.8e-38 161.8 232 45.7
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 4.9e-37 158.7 207 46.4
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 4.9e-37 158.7 158 56.3
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 6.4e-37 158.3 208 51.0
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 1.1e-36 157.5 229 48.0
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 1.1e-36 157.5 218 45.4
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 1.4e-36 157.1 218 46.3
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.4e-36 157.1 228 45.6
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.9e-36 156.8 211 45.5
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.4e-36 155.2 208 43.8
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 7.1e-36 154.8 165 53.3
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.2e-36 154.5 228 45.2
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 9.2e-36 154.5 228 45.2
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 1.2e-35 154.1 200 46.5
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.6e-35 153.7 204 47.1
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.7e-35 152.9 186 51.6
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 4.6e-35 152.1 192 44.8
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 6.0e-35 151.8 187 50.8
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.0e-34 151.0 209 47.8
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.0e-34 151.0 192 45.8
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.0e-34 149.4 210 48.6
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.0e-34 149.4 216 48.6
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.9e-34 149.1 201 44.3
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 3.9e-34 149.1 243 40.3
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.9e-34 149.1 193 44.6
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.9e-34 149.1 191 49.7
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 3.9e-34 149.1 228 43.0
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 5.1e-34 148.7 232 42.7
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 6.6e-34 148.3 188 51.6
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.5e-33 147.1 236 47.9
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.5e-33 147.1 217 43.3
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.9e-33 146.7 235 41.3
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.9e-33 146.7 224 42.0
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.5e-33 146.4 208 43.3
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 2.5e-33 146.4 91 72.5
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 3.3e-33 146.0 204 45.6
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 3.3e-33 146.0 186 46.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 4.3e-33 145.6 119 57.1
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 5.6e-33 145.2 202 41.6
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 4.7e-32 142.1 173 45.7
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.7e-32 142.1 185 43.2
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 8.1e-32 141.4 207 41.1
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.1e-32 141.4 232 47.8
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 1.1e-31 141.0 206 42.7
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 3.1e-31 139.4 200 42.0
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 8.9e-31 137.9 161 53.4
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.5e-30 137.1 216 42.1
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 2.0e-30 136.7 229 39.7
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 2.0e-30 136.7 217 42.4
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 2.6e-30 136.3 202 39.6
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-30 136.0 193 41.5
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 4.4e-30 135.6 192 47.9
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 4.4e-30 135.6 192 45.8
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.3e-29 134.0 241 41.5
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.7e-29 133.7 212 41.0
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 3.8e-29 132.5 197 45.2
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 4.9e-29 132.1 225 44.9
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 8.4e-29 131.3 93 65.6
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 1.1e-28 131.0 204 42.2
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.1e-28 131.0 248 40.7
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 1.9e-28 130.2 248 40.7
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.4e-28 129.8 177 44.1
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 4.2e-28 129.0 190 44.7
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 4.2e-28 129.0 190 44.7
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 4.2e-28 129.0 209 41.1
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 4.2e-28 129.0 228 43.9
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 5.4e-28 128.6 185 42.2
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 9.2e-28 127.9 191 44.5
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 9.2e-28 127.9 191 44.5
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.2e-27 127.5 244 43.4
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.6e-27 127.1 173 44.5
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.0e-26 124.4 226 39.8
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 2.3e-26 123.2 221 46.2
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 5.6e-25 118.6 78 70.5
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 5.6e-25 118.6 175 42.3
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 7.3e-25 118.2 201 39.8
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 1.2e-24 117.5 75 68.0
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.6e-24 117.1 213 37.6
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.8e-24 116.3 209 39.2
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 2.8e-24 116.3 166 43.4
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 3.6e-24 115.9 193 43.5
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 4.7e-24 115.5 246 35.4
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 4.0e-23 112.5 246 35.8
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.2e-22 110.9 136 41.2
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.4e-22 109.4 186 39.2
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 4.4e-22 109.0 191 50.3
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 5.8e-22 108.6 171 42.1
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.3e-21 107.5 77 61.0
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.2e-21 106.7 207 44.9
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 2.4e-20 103.2 227 35.7
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 7.1e-20 101.7 168 39.9
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 7.1e-20 101.7 239 33.9
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 9.3e-20 101.3 134 42.5
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 9.3e-20 101.3 210 37.1
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.1e-19 100.1 206 43.2
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 7.8e-19 98.2 174 40.2
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 8.7e-18 94.7 107 45.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 8.7e-18 94.7 94 43.6
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.3e-17 92.8 173 28.9
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 4.3e-17 92.4 193 40.4
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.3e-16 90.9 185 35.7
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 2.1e-16 90.1 92 44.6
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.1e-16 90.1 53 69.8
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 4.8e-16 89.0 88 51.1
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 4.8e-16 89.0 215 32.1
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 4.8e-16 89.0 73 58.9
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 6.2e-16 88.6 124 40.3
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 6.2e-16 88.6 93 47.3
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 6.2e-16 88.6 197 35.5
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.1e-16 88.2 77 54.5
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 8.1e-16 88.2 74 55.4
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 1.8e-15 87.0 207 35.7
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 6.9e-15 85.1 95 43.2
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 6.9e-15 85.1 214 30.4
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 9.0e-15 84.7 76 52.6
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 4.5e-14 82.4 83 49.4
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 5.8e-14 82.0 60 55.0
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 1.7e-13 80.5 63 54.0
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 4.9e-13 79.0 186 37.1
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 6.4e-13 78.6 96 44.8
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.1e-12 77.8 99 41.4
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 2.4e-12 76.6 190 33.2
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 3.2e-12 76.3 235 35.3
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.2e-12 76.3 224 33.0
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 4.2e-12 75.9 99 37.4
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.2e-11 74.3 220 32.7
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 3.5e-11 72.8 93 41.9
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 7.9e-11 71.6 71 43.7
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 3.9e-10 69.3 96 37.5
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 8.7e-10 68.2 71 43.7
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.5e-09 66.6 71 42.3
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.6e-09 65.5 177 28.8
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.4e-09 65.1 185 33.0
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 7.4e-09 65.1 58 44.8
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 8.1e-08 61.6 51 47.1
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.1e-08 61.6 235 36.2
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 1.1e-07 61.2 64 45.3
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.1e-07 61.2 183 35.5
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 2.4e-07 60.1 91 38.5
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.4e-07 60.1 177 25.4
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 4.0e-07 59.3 222 27.0
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.0e-06 57.0 177 26.0
DCAR_020672 Daucus carota HOM05D003229 ORTHO05D003835 2.6e-06 56.6 91 33.0
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 7.6e-06 55.1 61 41.0
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 7.6e-06 55.1 61 41.0
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 7.6e-06 55.1 61 41.0
COL.COLO4_15223 Corchorus olitorius HOM05D003229 ORTHO05D003835 9.9e-06 54.7 170 31.2


User provided reference genes

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