Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 8.7e-103 377.1 206 100.0
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 5.1e-79 298.1 167 83.2
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 5.3e-76 288.1 169 78.7
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 9.3e-73 277.3 168 73.8
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 2.1e-72 276.2 169 75.7
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 5.7e-70 268.1 166 72.9
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 5.7e-70 268.1 166 70.5
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 3.7e-69 265.4 186 69.9
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 6.3e-69 264.6 167 70.7
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 8.2e-69 264.2 164 72.0
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.1e-68 263.8 165 73.9
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.8e-68 263.1 164 71.3
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.8e-68 263.1 167 68.9
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.8e-68 263.1 167 71.3
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 2.4e-68 262.7 167 70.1
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.1e-68 262.3 165 74.5
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 3.1e-68 262.3 161 70.8
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 5.3e-68 261.5 164 70.1
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 9.1e-68 260.8 166 71.7
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.2e-67 260.4 160 71.9
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 2.0e-67 259.6 163 70.6
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 4.5e-67 258.5 166 71.1
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 5.9e-67 258.1 165 70.9
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 7.7e-67 257.7 160 71.2
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 7.7e-67 257.7 164 70.1
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 1.7e-66 256.5 166 71.1
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 2.2e-66 256.1 162 72.2
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 2.2e-66 256.1 163 71.8
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 3.8e-66 255.4 162 71.0
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 3.8e-66 255.4 166 71.1
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 6.5e-66 254.6 172 66.9
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 1.1e-65 253.8 168 67.9
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 1.4e-65 253.4 162 70.4
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.4e-65 253.4 173 68.8
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 1.9e-65 253.1 167 70.1
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.5e-65 252.7 166 69.9
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 3.2e-65 252.3 168 67.9
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 4.2e-65 251.9 165 69.1
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 4.2e-65 251.9 160 71.2
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.5e-65 251.5 173 68.2
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 5.5e-65 251.5 173 67.1
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 7.2e-65 251.1 172 65.7
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 7.2e-65 251.1 163 72.4
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 7.2e-65 251.1 173 67.6
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 7.2e-65 251.1 173 67.6
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 2.1e-64 249.6 157 68.8
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.1e-64 249.6 160 71.2
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-64 248.8 166 71.1
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 4.6e-64 248.4 170 67.6
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 4.6e-64 248.4 158 70.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.8e-63 246.5 164 68.3
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 3.0e-63 245.7 169 65.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 8.8e-63 244.2 163 68.7
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 8.8e-63 244.2 162 66.0
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 8.8e-63 244.2 166 69.3
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 8.8e-63 244.2 164 65.9
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.1e-62 243.8 154 72.1
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.5e-62 243.4 161 64.6
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.5e-62 243.4 157 69.4
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.5e-62 243.4 165 67.9
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 2.0e-62 243.0 166 69.3
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 3.3e-62 242.3 171 67.8
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.4e-62 241.9 163 67.5
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.4e-62 241.9 163 67.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 9.7e-62 240.7 164 64.6
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 2.2e-61 239.6 161 65.2
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 2.2e-61 239.6 161 65.8
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 3.7e-61 238.8 159 67.3
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 4.8e-61 238.4 163 66.9
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 4.8e-61 238.4 174 64.4
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 6.3e-61 238.0 161 65.2
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 8.2e-61 237.7 163 66.9
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.4e-60 236.9 166 63.9
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.4e-60 236.9 163 67.5
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 2.4e-60 236.1 163 66.9
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 2.4e-60 236.1 152 67.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 3.1e-60 235.7 152 67.8
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 3.1e-60 235.7 169 64.5
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 4.1e-60 235.3 152 69.1
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 5.3e-60 235.0 163 63.2
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 6.9e-60 234.6 163 65.6
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 6.9e-60 234.6 163 65.0
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 6.9e-60 234.6 169 63.3
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 6.9e-60 234.6 161 62.7
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 9.1e-60 234.2 169 64.5
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 9.1e-60 234.2 167 61.1
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.2e-59 233.8 163 65.6
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.2e-59 233.8 163 65.6
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 1.5e-59 233.4 175 64.6
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 2.0e-59 233.0 167 64.7
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 2.6e-59 232.6 163 65.6
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 2.6e-59 232.6 163 66.3
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 7.7e-59 231.1 160 63.8
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 7.7e-59 231.1 160 64.4
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 7.7e-59 231.1 154 68.2
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.7e-58 229.9 161 62.1
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 2.2e-58 229.6 163 65.6
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 3.8e-58 228.8 163 65.0
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 5.0e-58 228.4 163 65.0
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 6.5e-58 228.0 163 65.0
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.9e-57 226.5 159 62.3
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 2.5e-57 226.1 163 65.0
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 3.6e-56 222.2 149 66.4
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 5.2e-55 218.4 152 63.2
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 2.9e-50 202.6 151 59.6
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.5e-49 200.3 159 57.2
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 5.5e-49 198.4 156 59.6
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 9.4e-49 197.6 136 67.6
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 2.0e-46 189.9 155 54.8
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 9.7e-46 187.6 169 55.6
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 6.3e-45 184.9 155 54.2
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.0e-43 179.9 159 50.3
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 8.5e-42 174.5 96 83.3
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.2e-41 171.4 158 50.0
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.2e-41 171.4 158 50.0
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.7e-40 169.5 139 61.2
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 6.1e-40 168.3 184 52.7
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.6e-38 162.9 91 76.9
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.7e-38 161.8 150 48.7
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.7e-37 160.2 95 75.8
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.7e-37 160.2 96 72.9
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 2.2e-29 133.3 97 62.9
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 4.1e-28 129.0 164 39.6
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 1.4e-23 114.0 73 72.6
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.0e-23 112.8 75 70.7
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.7e-21 107.1 81 58.0
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 4.9e-21 105.5 71 66.2
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 4.1e-20 102.4 70 62.9
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 2.0e-19 100.1 68 66.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.3e-18 96.7 87 51.7
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.5e-17 94.0 156 32.7
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.4e-15 87.4 145 29.0
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.4e-12 77.4 49 73.5
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 1.9e-12 77.0 45 66.7
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 5.4e-12 75.5 73 52.1
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.7e-11 73.2 143 22.4


User provided reference genes

Program Settings