Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.8e-263 910.6 453 100.0
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.0e-244 847.4 438 96.6
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.0e-244 847.4 438 96.6
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.7e-221 770.4 438 86.8
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.8e-209 730.7 438 83.3
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.8e-202 708.8 438 81.5
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 8.3e-199 697.2 427 80.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.6e-189 666.4 436 75.2
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.1e-185 653.7 438 73.7
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.4e-185 653.3 432 72.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.8e-185 652.9 438 72.4
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.1e-185 652.1 432 72.5
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 4.0e-185 651.7 433 72.3
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.0e-184 649.4 433 72.1
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.3e-183 646.7 438 71.5
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.3e-183 646.7 436 71.8
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.2e-183 646.0 438 70.3
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.9e-183 645.6 431 72.6
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 4.9e-183 644.8 436 71.8
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 6.4e-183 644.4 426 73.2
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.1e-182 643.7 438 72.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.2e-182 642.1 436 71.6
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 5.4e-182 641.3 432 72.5
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.9e-180 635.2 432 73.8
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.1e-180 634.8 432 71.1
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 5.1e-180 634.8 436 72.0
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 6.6e-180 634.4 432 73.8
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 8.7e-180 634.0 432 71.3
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-179 633.6 419 72.6
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 4.3e-179 631.7 435 72.0
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 4.3e-179 631.7 438 71.7
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 4.3e-179 631.7 435 72.0
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 4.3e-179 631.7 436 72.2
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 7.3e-179 630.9 408 77.5
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 9.6e-179 630.6 433 71.6
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.6e-178 629.8 438 71.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.1e-178 629.4 424 73.1
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.8e-178 629.0 438 70.5
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 6.2e-178 627.9 430 70.9
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.1e-177 627.1 432 72.5
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.1e-177 627.1 435 70.8
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.4e-177 626.7 437 70.7
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.8e-177 626.3 442 71.0
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 4.0e-177 625.2 436 70.9
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 5.2e-177 624.8 438 70.5
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.0e-176 622.9 425 69.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.6e-176 622.5 501 63.3
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.7e-175 619.8 406 75.1
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 2.2e-175 619.4 433 71.1
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.2e-175 619.4 426 69.7
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 2.2e-175 619.4 430 70.0
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.2e-175 619.4 429 68.3
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 2.9e-175 619.0 433 70.9
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.9e-175 619.0 438 69.6
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.8e-175 618.6 435 71.5
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 6.4e-175 617.8 477 66.2
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 6.4e-175 617.8 432 70.6
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 8.4e-175 617.5 433 71.1
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-174 617.1 430 68.1
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.1e-174 617.1 438 71.0
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.4e-174 616.7 433 71.1
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.9e-174 616.3 426 68.3
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.4e-174 615.9 425 71.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.4e-174 615.9 430 68.1
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 3.2e-174 615.5 455 67.9
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 4.2e-174 615.1 423 69.0
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.2e-173 613.6 437 70.9
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.3e-172 610.1 475 64.8
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.7e-172 609.8 434 70.0
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.1e-172 608.2 432 69.2
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.1e-171 607.1 470 65.5
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.9e-171 606.3 423 70.7
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.9e-171 606.3 438 68.3
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 5.6e-171 604.7 432 67.6
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 9.6e-171 604.0 403 72.0
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.3e-170 603.6 438 69.6
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 8.1e-170 600.9 430 66.7
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 3.1e-169 599.0 438 68.3
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 3.4e-168 595.5 433 68.4
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.6e-160 567.8 432 65.5
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.9e-159 565.8 444 63.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.9e-159 565.1 426 67.6
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.9e-155 553.1 382 69.4
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.9e-155 553.1 444 61.5
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 5.6e-155 551.6 408 68.1
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.3e-154 550.4 424 66.5
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 3.4e-152 542.3 408 67.4
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.1e-150 537.3 430 63.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 5.5e-150 535.0 342 80.1
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.6e-149 531.9 269 98.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 7.9e-149 531.2 438 61.9
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.2e-146 523.1 390 65.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.1e-141 505.0 417 62.4
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.1e-139 500.7 336 75.0
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 4.8e-138 495.4 433 59.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 4.1e-137 492.3 369 65.6
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 5.5e-134 481.9 368 63.0
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 3.0e-132 476.1 459 55.8
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 4.4e-131 472.2 344 68.9
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.7e-130 470.3 420 55.0
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 3.7e-130 469.2 363 65.0
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 6.3e-130 468.4 337 69.4
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 1.8e-129 466.8 335 69.9
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.0e-127 461.1 326 69.0
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.2e-126 454.9 438 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.6e-125 453.8 417 54.9
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.3e-123 446.0 420 54.0
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.3e-122 444.1 344 66.0
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 5.9e-120 435.3 312 69.6
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 4.4e-115 419.1 409 53.8
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.7e-111 407.1 335 62.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.7e-103 380.6 580 37.9
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 8.6e-103 378.3 273 65.9
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.9e-102 377.1 284 66.5
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 5.7e-99 365.5 356 56.5
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.8e-98 363.2 378 55.6
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 5.0e-95 352.4 270 62.6
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 8.6e-95 351.7 367 54.8
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 1.3e-90 337.8 281 60.9
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.2e-85 321.2 423 43.0
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 8.0e-85 318.5 430 41.4
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.4e-84 317.8 205 72.7
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 5.8e-83 312.4 235 66.4
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-80 304.7 152 98.7
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.5e-80 303.1 434 41.9
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 3.3e-78 296.6 404 42.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.3e-70 269.6 367 44.7
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.5e-67 261.2 150 82.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 2.9e-66 256.9 214 59.8
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 3.8e-66 256.5 233 55.8
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.1e-65 255.0 468 34.8
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.7e-64 250.4 147 83.0
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 4.3e-62 243.0 150 76.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 5.6e-62 242.7 147 77.6
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.2e-58 230.7 143 74.8
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 4.9e-58 229.6 411 36.3
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.8e-53 213.0 184 59.2
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 3.1e-52 210.3 141 68.8
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 4.5e-51 206.5 118 86.4
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 5.8e-51 206.1 260 50.8
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 7.6e-51 205.7 406 35.5
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 6.2e-45 186.0 111 79.3
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.2e-35 155.2 92 82.6
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.2e-35 155.2 92 82.6
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.4e-33 148.3 128 65.6
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 2.8e-29 134.0 437 27.7
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 6.5e-26 122.9 93 60.2
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.0e-23 115.5 62 88.7
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 4.4e-14 83.6 340 26.2
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 9.7e-14 82.4 125 45.6
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 3.7e-13 80.5 108 46.3
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.5e-11 73.9 50 72.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.7e-10 71.6 53 64.2
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 5.5e-09 66.6 71 46.5
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.2e-08 65.5 43 62.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 2.1e-08 64.7 69 44.9
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 2.7e-08 64.3 63 49.2
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 2.6e-06 57.8 71 43.7


User provided reference genes

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