Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 5.3e-167 590.9 284 100.0
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.2e-149 532.3 284 89.4
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 3.3e-145 518.5 284 87.0
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 6.9e-143 510.8 284 84.9
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.9e-140 502.7 283 83.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 3.2e-140 501.9 284 82.4
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 7.2e-140 500.7 284 82.0
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.1e-139 499.2 284 83.8
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 6.1e-139 497.7 284 82.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.0e-138 496.9 284 82.4
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.0e-138 496.9 284 82.0
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.4e-138 496.5 283 83.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 3.0e-138 495.4 280 82.1
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 3.9e-138 495.0 284 82.0
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 3.9e-138 495.0 283 81.3
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 3.9e-138 495.0 284 81.0
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 5.1e-138 494.6 284 82.0
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 6.7e-138 494.2 284 82.4
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.5e-137 492.3 282 81.9
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 4.3e-137 491.5 280 81.4
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 5.7e-137 491.1 284 80.6
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 5.7e-137 491.1 283 82.3
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.3e-136 490.0 284 80.3
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.3e-136 490.0 284 81.7
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-136 489.6 282 81.2
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.7e-136 489.6 283 80.9
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 4.8e-136 488.0 283 80.6
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-135 486.9 281 81.1
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.4e-135 486.5 284 80.6
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.8e-135 486.1 283 80.9
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 3.1e-135 485.3 280 80.7
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.1e-135 485.3 278 81.7
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 6.9e-135 484.2 281 79.7
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.2e-134 483.4 284 81.3
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.0e-134 482.6 280 80.7
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.6e-134 482.3 284 81.0
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.4e-134 481.9 283 80.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 4.5e-134 481.5 284 79.2
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 1.0e-133 480.3 284 79.2
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.7e-133 479.6 284 78.2
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.7e-133 479.6 282 79.4
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.9e-133 478.8 284 80.3
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 8.5e-133 477.2 270 83.3
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.4e-132 476.5 280 79.3
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 1.9e-132 476.1 282 79.1
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 2.5e-132 475.7 282 78.7
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 4.2e-132 474.9 286 80.1
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 9.4e-132 473.8 281 78.6
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 2.1e-131 472.6 284 81.0
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.7e-131 472.2 284 77.5
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 3.6e-131 471.9 281 79.7
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.4e-130 469.9 288 77.4
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.1e-129 466.8 283 76.7
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.5e-129 466.5 298 76.5
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 3.3e-129 465.3 284 77.8
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 7.4e-129 464.2 281 77.6
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 7.4e-129 464.2 284 76.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.3e-128 463.4 283 77.7
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 4.8e-128 461.5 284 77.5
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 6.3e-128 461.1 283 77.0
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.8e-127 459.5 284 77.1
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.4e-127 459.1 282 73.0
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 4.1e-127 458.4 311 70.7
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 9.1e-127 457.2 282 75.2
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 1.5e-126 456.4 282 73.8
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.6e-126 455.7 274 78.1
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 77.6
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.0e-125 453.8 281 73.7
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 3.8e-125 451.8 314 69.7
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 3.8e-125 451.8 284 73.9
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 5.0e-125 451.4 284 73.9
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 5.0e-125 451.4 277 78.0
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 6.5e-125 451.1 282 72.0
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 8.5e-125 450.7 281 73.0
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 8.5e-125 450.7 281 73.0
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.5e-124 449.9 281 72.2
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.5e-124 449.9 281 73.0
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.5e-124 449.9 282 72.7
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.9e-124 449.5 281 72.2
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.9e-124 449.5 281 72.2
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 3.2e-124 448.7 250 82.8
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 9.4e-124 447.2 281 72.2
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.7e-123 445.7 284 74.3
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 3.6e-123 445.3 270 77.8
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 4.7e-123 444.9 284 74.3
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 6.1e-123 444.5 289 71.3
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 5.2e-122 441.4 284 75.4
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.5e-121 439.9 271 76.8
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 7.5e-121 437.6 269 77.3
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.2e-120 436.0 284 72.9
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.2e-120 436.0 284 72.9
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.3e-117 426.8 270 73.3
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.9e-116 422.9 264 77.3
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 2.1e-115 419.5 282 68.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.7e-115 419.1 251 77.7
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.1e-111 407.1 278 68.7
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.2e-110 403.7 278 68.3
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 3.5e-110 402.1 236 80.5
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.1e-108 397.1 284 69.0
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.3e-106 389.4 251 68.9
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.3e-106 389.4 251 68.5
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.0e-106 389.0 426 50.9
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 3.1e-103 379.0 269 66.9
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 4.5e-102 375.2 260 65.8
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.2e-97 360.5 419 48.9
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 4.4e-97 358.6 248 65.3
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.9e-96 355.9 190 87.4
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 8.6e-93 344.4 283 56.9
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 8.0e-91 337.8 282 58.2
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.3e-88 330.5 281 57.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 3.0e-85 319.3 269 60.2
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.3e-80 303.9 267 55.1
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.6e-78 297.0 167 79.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.0e-77 294.3 167 78.4
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.3e-77 293.9 283 51.2
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 3.0e-77 292.7 176 75.0
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 2.5e-76 289.7 309 50.2
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.8e-74 283.5 144 86.8
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 8.4e-72 274.6 180 66.1
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 6.8e-66 255.0 296 46.3
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.9e-63 246.9 156 73.7
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.6e-59 233.8 143 79.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-59 233.8 135 82.2
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 2.8e-59 233.0 249 48.6
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 2.0e-57 226.9 291 44.0
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 5.1e-53 212.2 147 60.5
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.3e-51 207.6 248 45.6
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 5.5e-47 192.2 156 62.8
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 4.3e-44 182.6 223 40.4
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-31 141.0 110 58.2
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 3.6e-30 136.3 77 77.9
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 3.9e-29 132.9 71 80.3
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.1e-26 123.2 72 70.8
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.1e-26 123.2 72 70.8
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 6.5e-24 115.5 92 65.2
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.2e-23 113.2 80 65.0
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.2e-22 111.3 80 66.2
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-22 110.5 75 70.7
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.7e-22 110.2 76 69.7
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 2.2e-16 90.5 57 71.9
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.8e-16 89.7 96 52.1
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.4e-15 87.8 87 55.2
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.5e-09 66.2 99 42.4
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.5e-07 61.2 143 30.1
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.2e-06 58.2 117 29.9


User provided reference genes

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