Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.4e-83 312.0 147 100.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 8.6e-12 74.3 72 56.9
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.1e-11 73.9 72 55.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.9e-11 73.2 72 55.6
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.9e-11 73.2 72 55.6
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.5e-11 72.8 76 52.6
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 4.3e-11 72.0 72 55.6
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 5.6e-11 71.6 70 55.7
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 7.3e-11 71.2 72 55.6
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.5e-11 70.9 72 54.2
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 9.5e-11 70.9 72 54.2
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 9.5e-11 70.9 72 54.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 9.5e-11 70.9 72 54.2
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.2e-10 70.5 72 54.2
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.2e-10 70.5 72 54.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.6e-10 70.1 72 52.8
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.6e-10 70.1 70 54.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.6e-10 70.1 72 54.2
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.1e-10 69.7 72 52.8
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.1e-10 69.7 72 54.2
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.1e-10 69.7 72 52.8
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.1e-10 69.7 72 52.8
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.1e-10 69.7 72 52.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 51.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 54.2
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.8e-10 69.3 70 52.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 52.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 51.4
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 52.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 52.8
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 54.2
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 52.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 52.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.8e-10 69.3 72 52.8
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 52.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.6e-10 68.9 72 51.4
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 52.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 52.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 51.4
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.6e-10 68.9 70 54.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 4.7e-10 68.6 72 51.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 4.7e-10 68.6 72 51.4
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 4.7e-10 68.6 72 51.4
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 4.7e-10 68.6 72 51.4
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 4.7e-10 68.6 70 54.3
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 51.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 51.4
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 52.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 52.8
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 51.4
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 6.1e-10 68.2 70 51.4
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 6.1e-10 68.2 70 51.4
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 51.4
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 51.4
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 52.8
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 6.1e-10 68.2 72 52.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 6.1e-10 68.2 70 54.3
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.0e-10 67.8 72 52.8
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 8.0e-10 67.8 72 50.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 8.0e-10 67.8 72 50.0
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.4e-09 67.0 72 51.4
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.4e-09 67.0 72 51.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-09 67.0 70 51.4
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.4e-09 67.0 70 51.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-09 67.0 72 50.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.4e-09 67.0 72 47.2
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.8e-09 66.6 70 50.0
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.8e-09 66.6 70 51.4
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-09 66.6 72 52.8
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.8e-09 66.6 155 33.5
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.8e-09 66.6 72 51.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.3e-09 66.2 72 48.6
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.3e-09 66.2 72 50.0
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.3e-09 66.2 71 50.7
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 3.1e-09 65.9 72 51.4
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.1e-09 65.9 72 51.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.1e-09 65.9 72 51.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.1e-09 65.9 70 51.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.1e-09 65.9 70 51.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.1e-09 65.9 70 51.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.1e-09 65.9 70 51.4
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 3.1e-09 65.9 152 33.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.1e-09 65.9 72 50.0
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 3.1e-09 65.9 72 51.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.1e-09 65.9 72 50.0
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.1e-09 65.9 70 50.0
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.0e-09 65.5 72 51.4
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.0e-09 65.5 72 51.4
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.0e-09 65.5 72 52.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 4.0e-09 65.5 72 51.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.0e-09 65.5 72 50.0
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.2e-09 65.1 72 50.0
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.2e-09 65.1 72 50.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.2e-09 65.1 72 50.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 6.8e-09 64.7 70 50.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 8.9e-09 64.3 72 47.2
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.2e-08 63.9 69 50.7
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.5e-08 63.5 72 47.2
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-08 63.5 72 50.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-08 63.5 72 50.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-08 63.2 70 48.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.0e-08 63.2 40 67.5
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.6e-08 62.8 72 48.6
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.6e-08 62.8 72 47.2
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.6e-08 62.8 70 47.1
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.6e-08 62.8 70 47.1
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.4e-08 62.4 72 50.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.4e-08 62.4 72 48.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 4.4e-08 62.0 69 49.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.4e-08 62.0 72 47.2
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.8e-08 61.6 72 47.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.8e-08 61.6 70 45.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 5.8e-08 61.6 72 48.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 7.5e-08 61.2 29 86.2
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 7.5e-08 61.2 29 86.2
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 9.8e-08 60.8 70 50.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-07 60.5 70 48.6
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.7e-07 60.1 39 66.7
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.9e-07 59.3 29 86.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.7e-07 58.9 29 82.8
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.7e-07 58.9 29 82.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 4.9e-07 58.5 29 79.3
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.9e-07 58.5 29 79.3
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 6.4e-07 58.2 70 44.3
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.4e-07 58.2 70 47.1
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.4e-07 58.2 29 82.8
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.4e-06 57.0 29 82.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.4e-06 57.0 29 82.8
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.4e-06 57.0 28 78.6
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.4e-06 57.0 29 82.8
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.2e-06 55.8 29 79.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 4.1e-06 55.5 36 66.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 5.4e-06 55.1 72 44.4
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 5.4e-06 55.1 72 40.3
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.4e-06 55.1 70 44.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 9.2e-06 54.3 28 75.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.2e-06 54.3 28 78.6


User provided reference genes

Program Settings