Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.4e-44 182.6 90 100.0
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 6.8e-44 180.3 88 100.0
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 2.2e-42 175.3 88 94.3
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 6.4e-42 173.7 88 94.3
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 6.4e-42 173.7 88 94.3
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 6.4e-42 173.7 88 94.3
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 8.3e-42 173.3 88 94.3
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 1.4e-41 172.6 88 92.0
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.4e-41 172.6 88 92.0
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.4e-41 172.6 88 92.0
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 1.4e-41 172.6 88 92.0
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 3.2e-41 171.4 88 92.0
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 7.0e-41 170.2 88 89.8
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 7.0e-41 170.2 88 92.0
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 9.2e-41 169.9 88 93.2
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 1.2e-40 169.5 88 92.0
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 1.6e-40 169.1 88 88.6
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.6e-40 169.1 88 89.8
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 1.6e-40 169.1 88 90.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 2.0e-40 168.7 88 90.9
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 2.7e-40 168.3 88 88.6
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 2.7e-40 168.3 88 88.6
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 3.5e-40 167.9 88 89.8
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 3.5e-40 167.9 88 89.8
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 3.5e-40 167.9 88 90.9
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 4.6e-40 167.5 86 93.0
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 6.0e-40 167.2 95 87.4
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.8e-40 166.8 88 89.8
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.8e-40 166.8 88 89.8
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 7.8e-40 166.8 88 89.8
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 7.8e-40 166.8 88 90.9
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 7.8e-40 166.8 88 89.8
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 1.3e-39 166.0 88 89.8
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 1.3e-39 166.0 88 90.9
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 2.3e-39 165.2 88 88.6
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 2.3e-39 165.2 88 90.9
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 3.0e-39 164.9 88 87.5
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 3.9e-39 164.5 88 87.5
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 3.9e-39 164.5 88 89.8
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 5.0e-39 164.1 88 90.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 5.0e-39 164.1 88 90.9
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 6.6e-39 163.7 88 87.5
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 6.6e-39 163.7 88 86.4
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 8.6e-39 163.3 88 88.6
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 8.6e-39 163.3 88 87.5
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 1.1e-38 162.9 88 89.8
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 1.1e-38 162.9 88 89.8
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 1.5e-38 162.5 88 86.4
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 1.5e-38 162.5 88 86.4
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 2.5e-38 161.8 88 88.6
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 2.5e-38 161.8 88 88.6
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.5e-38 161.8 88 88.6
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.5e-38 161.8 88 88.6
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.5e-38 161.8 88 88.6
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 2.5e-38 161.8 88 88.6
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 3.3e-38 161.4 88 87.5
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 4.3e-38 161.0 88 86.4
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 5.6e-38 160.6 88 86.4
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 7.3e-38 160.2 88 87.5
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 7.3e-38 160.2 88 85.2
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 9.5e-38 159.8 88 87.5
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 1.2e-37 159.5 88 85.2
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 1.2e-37 159.5 88 85.2
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 1.2e-37 159.5 88 86.4
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.6e-37 159.1 88 86.4
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.6e-37 159.1 88 87.5
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 2.1e-37 158.7 88 87.5
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 2.1e-37 158.7 88 85.2
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 2.8e-37 158.3 88 84.1
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 1.1e-36 156.4 88 85.2
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.4e-36 156.0 88 83.0
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.8e-36 155.6 88 85.2
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 2.3e-36 155.2 88 83.0
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 6.8e-36 153.7 101 78.2
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 6.8e-36 153.7 88 84.1
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 1.5e-35 152.5 88 79.5
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 2.6e-35 151.8 84 84.5
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 2.6e-35 151.8 84 84.5
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 2.6e-35 151.8 88 79.5
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 2.6e-35 151.8 84 84.5
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 3.4e-35 151.4 84 84.5
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 3.4e-35 151.4 84 84.5
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 3.4e-35 151.4 84 84.5
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 3.4e-35 151.4 84 84.5
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 3.4e-35 151.4 84 84.5
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 4.4e-35 151.0 84 83.3
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 4.4e-35 151.0 84 83.3
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 4.4e-35 151.0 84 83.3
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 4.4e-35 151.0 84 83.3
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 4.4e-35 151.0 84 83.3
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 5.8e-35 150.6 88 79.5
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 7.5e-35 150.2 84 83.3
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 9.8e-35 149.8 88 79.5
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 3.7e-34 147.9 88 78.4
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 4.9e-34 147.5 88 76.1
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 6.4e-34 147.1 84 82.1
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 2.4e-33 145.2 88 78.4
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 7.0e-33 143.7 83 85.5
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 1.2e-32 142.9 131 60.3
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 3.5e-32 141.4 88 70.5
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 4.6e-32 141.0 139 56.8
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 1.3e-31 139.4 76 82.9
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.3e-31 139.4 73 91.8
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 5.1e-31 137.5 73 89.0
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 6.6e-31 137.1 78 84.6
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 6.6e-31 137.1 72 90.3
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 8.6e-31 136.7 72 90.3
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 1.5e-30 136.0 72 87.5
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 1.5e-30 136.0 72 91.7
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 5.6e-30 134.0 87 67.8
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 9.5e-30 133.3 72 87.5
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 1.4e-28 129.4 72 86.1
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.5e-27 125.9 139 51.1
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 3.4e-27 124.8 75 78.7
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 9.9e-27 123.2 64 89.1
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 2.2e-26 122.1 69 81.2
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 2.9e-26 121.7 76 73.7
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 4.9e-26 120.9 88 70.5
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 8.3e-26 120.2 73 78.1
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 8.3e-26 120.2 75 80.0
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 1.9e-25 119.0 92 63.0
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.9e-25 119.0 72 76.4
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 1.9e-22 109.0 88 60.2
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 2.1e-21 105.5 58 84.5
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 2.8e-21 105.1 86 60.5
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 1.8e-20 102.4 84 57.1
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 3.1e-20 101.7 57 86.0
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 4.0e-20 101.3 49 91.8
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 5.2e-20 100.9 62 82.3
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.7e-18 95.9 51 84.3
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 1.8e-12 75.9 42 83.3
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 3.4e-11 71.6 37 97.3
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 1.7e-10 69.3 85 42.4


User provided reference genes

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