Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 3.6e-64 248.1 122 100.0
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 2.6e-46 188.7 114 80.7
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 5.8e-46 187.6 114 78.1
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 9.8e-46 186.8 114 78.9
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 9.8e-46 186.8 114 81.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 4.9e-45 184.5 117 75.2
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 8.3e-45 183.7 114 78.1
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 2.4e-44 182.2 120 72.5
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 4.6e-43 177.9 114 75.4
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.3e-42 175.6 114 73.7
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 2.3e-42 175.6 114 71.1
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 3.9e-42 174.9 114 73.7
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 5.1e-42 174.5 114 69.3
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 6.6e-42 174.1 112 73.2
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 1.1e-41 173.3 112 73.2
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 2.5e-41 172.2 114 72.8
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 7.3e-41 170.6 107 75.7
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 1.2e-40 169.9 107 75.7
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 1.6e-40 169.5 114 72.8
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 2.1e-40 169.1 114 71.9
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 2.8e-40 168.7 114 69.3
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 3.6e-40 168.3 114 71.9
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.7e-40 167.9 115 74.8
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 6.2e-40 167.5 113 71.7
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 6.2e-40 167.5 114 73.7
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.1e-39 166.8 114 69.3
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 1.1e-39 166.8 114 71.1
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.8e-39 166.0 118 69.5
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.8e-39 166.0 114 71.1
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 1.8e-39 166.0 114 71.1
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 2.3e-39 165.6 114 69.3
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 4.0e-39 164.9 114 66.7
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 4.0e-39 164.9 114 71.1
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 6.8e-39 164.1 109 71.6
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 8.9e-39 163.7 114 69.3
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 1.5e-38 162.9 109 70.6
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 2.0e-38 162.5 113 70.8
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 2.0e-38 162.5 114 70.2
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.0e-38 162.5 114 70.2
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.0e-38 162.5 114 70.2
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.0e-38 162.5 114 68.4
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 2.6e-38 162.2 114 69.3
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 3.4e-38 161.8 115 69.6
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 3.4e-38 161.8 114 68.4
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 3.4e-38 161.8 114 67.5
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 4.4e-38 161.4 114 68.4
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 4.4e-38 161.4 114 69.3
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 5.8e-38 161.0 114 69.3
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 5.8e-38 161.0 107 70.1
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 5.8e-38 161.0 111 71.2
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 5.8e-38 161.0 114 66.7
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 7.6e-38 160.6 108 71.3
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 9.9e-38 160.2 114 69.3
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 1.7e-37 159.5 107 71.0
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 1.7e-37 159.5 116 68.1
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 1.7e-37 159.5 114 66.7
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.7e-37 159.5 114 68.4
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.7e-37 159.5 104 76.0
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 2.2e-37 159.1 109 69.7
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 2.9e-37 158.7 114 69.3
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 3.7e-37 158.3 104 76.0
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 4.9e-37 157.9 114 68.4
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 4.9e-37 157.9 111 69.4
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 6.4e-37 157.5 107 69.2
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 6.4e-37 157.5 114 66.7
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 6.4e-37 157.5 106 71.7
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.1e-36 156.8 108 68.5
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.4e-36 156.4 104 72.1
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.9e-36 156.0 107 68.2
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 2.4e-36 155.6 107 68.2
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 4.1e-36 154.8 114 67.5
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 4.1e-36 154.8 107 68.2
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 5.4e-36 154.5 114 67.5
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.2e-35 153.3 107 66.4
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 1.2e-35 153.3 114 66.7
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.2e-35 153.3 114 63.2
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 2.7e-35 152.1 107 66.4
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 3.5e-35 151.8 107 66.4
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 3.5e-35 151.8 107 66.4
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 3.5e-35 151.8 107 66.4
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 3.5e-35 151.8 107 66.4
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 3.5e-35 151.8 114 68.4
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 4.6e-35 151.4 105 69.5
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 4.6e-35 151.4 94 74.5
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 6.0e-35 151.0 107 65.4
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 6.0e-35 151.0 106 66.0
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 6.0e-35 151.0 114 67.5
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 7.8e-35 150.6 104 71.2
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 1.0e-34 150.2 107 65.4
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 3.0e-34 148.7 139 57.6
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 3.0e-34 148.7 115 63.5
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 5.1e-34 147.9 104 65.4
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 5.1e-34 147.9 114 63.2
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 6.6e-34 147.5 95 67.4
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 8.6e-34 147.1 95 67.4
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 1.1e-33 146.7 108 65.7
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 1.1e-33 146.7 114 65.8
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 1.1e-33 146.7 102 73.5
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 1.9e-33 146.0 104 69.2
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 1.9e-33 146.0 104 66.3
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 3.3e-33 145.2 110 68.2
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 4.3e-33 144.8 104 70.2
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 4.3e-33 144.8 114 65.8
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 5.6e-33 144.4 104 68.3
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 7.3e-33 144.1 104 69.2
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 1.2e-32 143.3 104 67.3
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 6.2e-32 141.0 115 64.3
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 6.2e-32 141.0 107 61.7
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 8.1e-32 140.6 90 70.0
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 8.1e-32 140.6 108 59.3
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.4e-31 139.8 85 76.5
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.4e-31 139.8 104 65.4
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 1.8e-31 139.4 126 60.3
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 1.5e-30 136.3 96 64.6
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.5e-30 136.3 96 62.5
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 1.5e-30 136.3 96 63.5
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 2.0e-30 136.0 101 62.4
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 2.2e-29 132.5 101 62.4
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 2.2e-29 132.5 99 68.7
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 1.1e-28 130.2 103 63.1
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 3.2e-28 128.6 82 74.4
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 7.8e-27 124.0 82 72.0
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 4.3e-25 118.2 104 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 2.1e-24 115.9 102 53.9
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 4.8e-24 114.8 92 56.5
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 1.1e-23 113.6 109 55.0
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 2.4e-23 112.5 70 80.0
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 4.9e-21 104.8 86 55.8
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 9.3e-20 100.5 67 74.6
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 7.9e-19 97.4 105 56.2
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 7.9e-19 97.4 62 74.2
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 1.3e-18 96.7 85 51.8
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.3e-18 96.7 79 62.0
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 7.6e-14 80.9 58 65.5
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 3.2e-12 75.5 96 43.8
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 3.5e-11 72.0 52 63.5
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 1.0e-10 70.5 88 46.6
CSS0033510 Camellia sinensis var. sinensis HOM05D034713 ORTHO05D006862 1.5e-09 66.6 71 57.7
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 1.8e-07 59.7 89 34.8


User provided reference genes

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