Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010590 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.6e-24 115.2 54 100.0
CSS0047210 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.6e-24 115.2 54 100.0
CSS0000529 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 5.4e-20 100.1 54 92.6
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 3.5e-19 97.4 46 100.0
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 3.5e-19 97.4 46 100.0
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 4.5e-19 97.1 46 97.8
PSO170G3925 Papaver somniferum HOM05D003483 ORTHO05D004101 4.5e-19 97.1 46 97.8
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 4.5e-19 97.1 46 97.8
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 4.5e-19 97.1 46 97.8
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 4.5e-19 97.1 46 97.8
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 5.9e-19 96.7 46 95.7
Duzib132G0067 Durio zibethinus HOM05D003483 ORTHO05D004101 7.7e-19 96.3 46 93.5
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 7.7e-19 96.3 46 93.5
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 1.0e-18 95.9 46 95.7
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 1.3e-18 95.5 46 93.5
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 1.3e-18 95.5 46 93.5
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 1.3e-18 95.5 46 93.5
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.3e-18 95.5 46 91.3
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 1.7e-18 95.1 46 91.3
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 1.7e-18 95.1 49 89.8
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 1.7e-18 95.1 45 97.8
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 1.7e-18 95.1 45 97.8
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 2.3e-18 94.7 45 95.6
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 2.3e-18 94.7 45 95.6
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 2.9e-18 94.4 46 93.5
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.9e-18 94.4 46 93.5
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 2.9e-18 94.4 46 95.7
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 2.9e-18 94.4 46 95.7
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 2.9e-18 94.4 46 95.7
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 93.5
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 95.7
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 93.5
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 93.5
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 93.5
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 93.5
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 3.8e-18 94.0 46 93.5
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 8.6e-18 92.8 46 91.3
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.1e-17 92.4 45 88.9
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 1.5e-17 92.0 45 93.3
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.5e-17 92.0 45 93.3
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.5e-17 92.0 45 93.3
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 1.5e-17 92.0 45 93.3
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.5e-17 92.0 46 91.3
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 1.9e-17 91.7 46 91.3
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 2.5e-17 91.3 45 93.3
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 2.5e-17 91.3 45 93.3
PGSC0003DMG400033698 Solanum tuberosum HOM05D003483 ORTHO05D004101 2.5e-17 91.3 45 93.3
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 3.3e-17 90.9 46 93.5
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 5.5e-17 90.1 45 91.1
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 7.2e-17 89.7 45 91.1
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 7.2e-17 89.7 46 89.1
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 7.2e-17 89.7 45 88.9
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 9.5e-17 89.4 45 88.9
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 9.5e-17 89.4 46 84.8
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 1.6e-16 88.6 46 84.8
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.1e-16 88.2 46 84.8
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 2.1e-16 88.2 46 87.0
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.1e-16 88.2 46 82.6
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 2.8e-16 87.8 46 89.1
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 2.8e-16 87.8 46 91.3
RcHm_v2.0_Chr7g0222931 Rosa chinensis HOM05D003483 ORTHO05D004101 2.8e-16 87.8 47 83.0
HPP92_027704 Vanilla planifolia HOM05D003483 ORTHO05D004101 2.8e-16 87.8 46 80.4
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 3.6e-16 87.4 45 86.7
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 4.7e-16 87.0 46 84.8
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 6.1e-16 86.7 49 73.5
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 8.0e-16 86.3 46 80.4
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 8.0e-16 86.3 46 80.4
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 8.0e-16 86.3 45 84.4
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 8.0e-16 86.3 47 85.1
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.0e-15 85.9 49 79.6
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 1.0e-15 85.9 46 82.6
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 1.0e-15 85.9 46 80.4
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 1.0e-15 85.9 46 80.4
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 1.0e-15 85.9 45 88.9
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 1.0e-15 85.9 46 80.4
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 1.4e-15 85.5 46 80.4
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 1.4e-15 85.5 46 80.4
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 1.4e-15 85.5 46 80.4
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.4e-15 85.5 49 75.5
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 1.4e-15 85.5 46 82.6
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 1.4e-15 85.5 45 82.2
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 1.8e-15 85.1 46 87.0
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.8e-15 85.1 46 78.3
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 1.8e-15 85.1 46 78.3
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 1.8e-15 85.1 46 82.6
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 1.8e-15 85.1 46 78.3
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 1.8e-15 85.1 46 78.3
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 2.3e-15 84.7 47 74.5
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.3e-15 84.7 46 76.1
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 2.3e-15 84.7 47 83.0
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 2.3e-15 84.7 44 86.4
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 4.0e-15 84.0 46 76.1
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 4.0e-15 84.0 45 84.4
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 4.0e-15 84.0 46 78.3
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 5.2e-15 83.6 46 78.3
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 5.2e-15 83.6 46 78.3
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 5.2e-15 83.6 46 78.3
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 6.8e-15 83.2 46 80.4
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 6.8e-15 83.2 46 78.3
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 6.8e-15 83.2 46 78.3
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 6.8e-15 83.2 46 78.3
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 6.8e-15 83.2 46 78.3
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 6.8e-15 83.2 46 78.3
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 6.8e-15 83.2 46 78.3
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 6.8e-15 83.2 45 80.0
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 6.8e-15 83.2 45 80.0
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 8.9e-15 82.8 46 78.3
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 8.9e-15 82.8 44 79.5
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 1.2e-14 82.4 46 78.3
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 1.2e-14 82.4 46 78.3
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 1.2e-14 82.4 45 80.0
Sopen01g046760 Solanum pennellii HOM05D003483 ORTHO05D004101 1.2e-14 82.4 46 80.4
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 1.2e-14 82.4 47 78.7
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 1.2e-14 82.4 47 74.5
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 1.5e-14 82.0 46 76.1
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 1.5e-14 82.0 46 76.1
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 2.6e-14 81.3 45 80.0
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 2.6e-14 81.3 46 76.1
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 2.6e-14 81.3 46 78.3
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 4.4e-14 80.5 46 73.9
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 5.7e-14 80.1 46 76.1
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 5.7e-14 80.1 46 73.9
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 7.5e-14 79.7 44 79.5
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 7.5e-14 79.7 46 78.3
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 9.8e-14 79.3 46 76.1
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 9.8e-14 79.3 46 73.9
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.3e-13 79.0 46 73.9
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.3e-13 79.0 46 76.1
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.2e-13 78.2 46 73.9
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 3.7e-13 77.4 46 73.9
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 4.9e-13 77.0 59 62.7
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 8.3e-13 76.3 45 80.0
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 1.4e-12 75.5 46 69.6
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 1.8e-12 75.1 46 71.7
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 4.1e-12 73.9 44 70.5
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 4.1e-12 73.9 46 76.1
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 2.0e-11 71.6 37 91.9
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 1.3e-10 68.9 47 66.0
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 3.3e-09 64.3 45 62.2
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 5.6e-09 63.5 34 82.4
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.2e-08 62.4 44 63.6
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 2.8e-08 61.2 44 56.8
CBR_g3139 Chara braunii HOM05D003483 ORTHO05D004101 8.0e-08 59.7 44 56.8
AT3G26080 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 3.1e-07 57.8 76 44.7


User provided reference genes

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