Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010583 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 8.2e-197 690.3 364 100.0
CSS0016294 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 4.4e-110 402.1 372 62.6
CSS0016569 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.1e-87 327.8 388 54.9
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 5.4e-23 112.8 65 86.2
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 7.0e-23 112.5 85 68.2
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 1.6e-22 111.3 65 83.1
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.6e-22 111.3 65 84.6
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 2.7e-22 110.5 67 79.1
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 2.7e-22 110.5 67 79.1
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 2.7e-22 110.5 67 79.1
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 2.7e-22 110.5 67 79.1
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.7e-22 110.5 65 84.6
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 3.5e-22 110.2 63 85.7
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 3.5e-22 110.2 70 80.0
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 3.5e-22 110.2 69 78.3
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 3.5e-22 110.2 61 85.2
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 3.5e-22 110.2 63 85.7
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 4.6e-22 109.8 61 85.2
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 6.0e-22 109.4 65 83.1
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 6.0e-22 109.4 65 84.6
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 6.0e-22 109.4 61 85.2
Solyc07g017530.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 6.0e-22 109.4 61 83.6
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 7.8e-22 109.0 61 86.9
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 1.0e-21 108.6 59 88.1
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 1.0e-21 108.6 63 82.5
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 1.3e-21 108.2 69 76.8
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.3e-21 108.2 61 83.6
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.3e-21 108.2 61 83.6
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 2.3e-21 107.5 66 77.3
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 2.3e-21 107.5 66 77.3
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 2.3e-21 107.5 63 82.5
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 2.3e-21 107.5 59 89.8
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.3e-21 107.5 59 89.8
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.3e-21 107.5 59 89.8
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.3e-21 107.5 59 89.8
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.3e-21 107.5 63 82.5
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 3.0e-21 107.1 65 78.5
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 3.0e-21 107.1 65 78.5
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 3.0e-21 107.1 65 78.5
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 3.0e-21 107.1 65 80.0
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 3.0e-21 107.1 59 86.4
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 3.0e-21 107.1 63 84.1
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 3.0e-21 107.1 63 84.1
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 3.0e-21 107.1 65 78.5
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 3.9e-21 106.7 61 85.2
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 3.9e-21 106.7 61 85.2
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 5.0e-21 106.3 65 81.5
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 5.0e-21 106.3 65 81.5
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 5.0e-21 106.3 63 81.0
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 5.0e-21 106.3 76 71.1
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 6.6e-21 105.9 65 78.5
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 8.6e-21 105.5 65 76.9
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 8.6e-21 105.5 65 76.9
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 8.6e-21 105.5 65 76.9
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 8.6e-21 105.5 65 76.9
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 8.6e-21 105.5 63 82.5
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 8.6e-21 105.5 63 82.5
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 8.6e-21 105.5 63 82.5
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 8.6e-21 105.5 63 81.0
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 1.1e-20 105.1 65 78.5
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 1.1e-20 105.1 64 81.2
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.1e-20 105.1 59 88.1
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.1e-20 105.1 59 88.1
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 1.1e-20 105.1 63 81.0
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.1e-20 105.1 78 70.5
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 1.5e-20 104.8 68 77.9
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 1.5e-20 104.8 68 77.9
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.5e-20 104.8 63 81.0
Nitab4.5_0000055g0040 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.9e-20 104.4 77 70.1
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 1.9e-20 104.4 91 59.3
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 2.5e-20 104.0 63 79.4
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 2.5e-20 104.0 63 79.4
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 3.3e-20 103.6 59 84.7
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 3.3e-20 103.6 63 82.5
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 3.3e-20 103.6 63 82.5
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 3.3e-20 103.6 63 82.5
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 3.3e-20 103.6 63 79.4
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 3.3e-20 103.6 68 76.5
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 4.3e-20 103.2 66 75.8
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.3e-20 103.2 82 68.3
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 4.3e-20 103.2 63 81.0
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 4.3e-20 103.2 59 83.1
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 5.6e-20 102.8 63 81.0
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 5.6e-20 102.8 58 87.9
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 5.6e-20 102.8 65 76.9
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 5.6e-20 102.8 63 81.0
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 5.6e-20 102.8 65 76.9
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 7.3e-20 102.4 63 81.0
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 7.3e-20 102.4 63 81.0
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 7.3e-20 102.4 63 77.8
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 9.5e-20 102.1 63 79.4
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 9.5e-20 102.1 68 75.0
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 1.6e-19 101.3 59 83.1
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.6e-19 101.3 59 83.1
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 2.1e-19 100.9 82 64.6
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 2.1e-19 100.9 63 76.2
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 2.1e-19 100.9 63 79.4
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 2.1e-19 100.9 65 75.4
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 2.1e-19 100.9 87 63.2
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 2.1e-19 100.9 65 73.8
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 2.8e-19 100.5 59 81.4
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 2.8e-19 100.5 65 73.8
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 3.6e-19 100.1 63 77.8
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.7e-19 99.8 82 65.9
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 4.7e-19 99.8 82 65.9
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 4.7e-19 99.8 82 68.3
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 6.2e-19 99.4 63 77.8
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 8.1e-19 99.0 65 70.8
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 1.1e-18 98.6 63 77.8
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 1.4e-18 98.2 63 76.2
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 1.4e-18 98.2 65 72.3
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.3e-18 97.4 82 64.6
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 4.0e-18 96.7 63 73.0
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 6.8e-18 95.9 63 74.6
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 3.4e-17 93.6 59 79.7
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 5.8e-17 92.8 63 73.0
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 7.5e-17 92.4 59 78.0
SEGI_20709 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 7.5e-17 92.4 62 71.0
CDE09G1393 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.3e-16 91.7 63 71.4
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 1.4e-15 88.2 63 63.5
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 3.2e-15 87.0 68 60.3
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 5.4e-15 86.3 63 63.5
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 7.1e-15 85.9 63 65.1
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.3e-13 81.6 63 58.7
CSS0004029 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D001382 7.3e-12 75.9 93 50.5
CSS0035114 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D001382 7.3e-12 75.9 93 50.5
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 2.9e-08 63.9 65 43.1
ClCG08G005090 Citrullus lanatus HOM05D003653 ORTHO05D004249 4.9e-08 63.2 33 87.9
QL02p096242 Quercus lobata HOM05D003653 ORTHO05D004249 8.4e-08 62.4 32 90.6
Dinv13978 Davidia involucrata HOM05D000857 ORTHO05D001382 3.2e-07 60.5 36 77.8
QL04p012178 Quercus lobata HOM05D000857 ORTHO05D001382 1.2e-06 58.5 36 75.0
CiPaw.13G009000 Carya illinoinensis HOM05D000857 ORTHO05D001382 2.7e-06 57.4 36 72.2
Cfa010835 Carpinus fangiana HOM05D000857 ORTHO05D001382 7.8e-06 55.8 36 69.4


User provided reference genes

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