Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010567 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.3e-62 243.0 132 100.0
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 8.7e-56 220.3 131 90.8
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.5e-55 219.5 131 90.1
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.8e-54 214.5 130 89.2
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.8e-54 214.5 130 89.2
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 1.5e-52 209.5 132 84.8
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 5.8e-52 207.6 132 84.8
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 2.2e-51 205.7 132 83.3
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 4.9e-51 204.5 132 83.3
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 2.4e-50 202.2 132 81.8
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.2e-49 199.9 132 82.6
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 4.6e-49 198.0 127 79.5
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 7.9e-49 197.2 132 81.8
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 1.3e-48 196.4 130 80.8
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 1.3e-48 196.4 132 78.8
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 3.9e-48 194.9 132 80.3
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 5.1e-48 194.5 127 81.9
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 5.1e-48 194.5 130 78.5
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 1.1e-47 193.4 132 78.8
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 1.1e-47 193.4 131 79.4
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 1.5e-47 193.0 133 80.5
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 2.5e-47 192.2 131 79.4
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 9.6e-47 190.3 133 78.9
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 2.1e-46 189.1 132 78.0
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 2.1e-46 189.1 133 78.2
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 2.1e-46 189.1 132 76.5
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 6.2e-46 187.6 133 77.4
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 8.2e-46 187.2 132 77.3
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.1e-45 186.8 132 79.5
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 1.1e-45 186.8 132 79.5
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 1.1e-45 186.8 130 78.5
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 1.8e-45 186.0 130 76.9
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.8e-45 186.0 132 78.0
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.4e-45 185.7 132 78.8
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 2.4e-45 185.7 133 76.7
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.0e-45 184.9 132 77.3
FAN18G3542 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.0e-45 184.9 132 77.3
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 5.3e-45 184.5 131 75.6
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 6.9e-45 184.1 132 77.3
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 9.0e-45 183.7 130 75.4
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 1.5e-44 183.0 130 75.4
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 2.0e-44 182.6 132 76.5
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 2.6e-44 182.2 130 74.6
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 2.6e-44 182.2 130 76.9
TAR623G1393 Trochodendron aralioides HOM05D003450 ORTHO05D004150 3.4e-44 181.8 127 74.8
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 4.5e-44 181.4 130 74.6
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 5.8e-44 181.0 132 75.8
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 1.3e-43 179.9 129 76.7
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 1.3e-43 179.9 127 75.6
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.7e-43 179.5 132 75.8
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 2.2e-43 179.1 131 73.3
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 2.2e-43 179.1 131 73.3
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 4.9e-43 177.9 132 72.0
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 6.5e-43 177.6 131 74.8
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 8.4e-43 177.2 131 74.0
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 8.4e-43 177.2 131 72.5
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 8.4e-43 177.2 129 76.7
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 1.1e-42 176.8 130 75.4
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 1.4e-42 176.4 131 71.8
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 2.5e-42 175.6 131 72.5
Sc07g0005170 Simmondsia chinensis HOM05D003450 ORTHO05D004150 2.5e-42 175.6 127 74.8
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 7.1e-42 174.1 131 72.5
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 9.3e-42 173.7 134 71.6
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 1.2e-41 173.3 130 73.1
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 1.2e-41 173.3 130 72.3
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 3.5e-41 171.8 124 72.6
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 4.6e-41 171.4 130 70.8
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 1.3e-40 169.9 128 72.7
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.8e-40 169.5 120 73.3
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 3.0e-40 168.7 125 72.0
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 3.0e-40 168.7 124 72.6
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 5.1e-40 167.9 122 72.1
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 5.1e-40 167.9 131 67.2
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 5.1e-40 167.9 131 74.0
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 6.7e-40 167.5 134 67.9
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 6.7e-40 167.5 134 67.9
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 8.7e-40 167.2 130 70.8
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 1.9e-39 166.0 131 72.5
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 2.5e-39 165.6 123 72.4
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 7.4e-39 164.1 130 67.7
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 9.7e-39 163.7 131 69.5
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.8e-38 162.2 125 69.6
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 3.7e-38 161.8 132 68.9
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 4.8e-38 161.4 130 72.3
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 6.3e-38 161.0 124 67.7
Zm00001eb191840 Zea mays HOM05D003450 ORTHO05D004150 6.3e-38 161.0 124 67.7
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 8.2e-38 160.6 127 66.9
Zm00001eb068810 Zea mays HOM05D003450 ORTHO05D004150 1.1e-37 160.2 124 66.9
Zm00001eb162870 Zea mays HOM05D003450 ORTHO05D004150 3.1e-37 158.7 124 66.9
Zm00001eb190000 Zea mays HOM05D003450 ORTHO05D004150 3.1e-37 158.7 124 66.9
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 4.1e-37 158.3 124 66.1
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 4.1e-37 158.3 124 66.1
Zm00001eb235100 Zea mays HOM05D003450 ORTHO05D004150 5.3e-37 157.9 124 66.1
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 9.0e-37 157.1 120 70.0
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 9.0e-37 157.1 121 66.9
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.5e-36 156.4 118 76.3
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 2.6e-36 155.6 129 65.9
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 2.6e-36 155.6 129 67.4
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.6e-36 155.6 133 67.7
Zm00001eb170860 Zea mays HOM05D003450 ORTHO05D004150 3.4e-36 155.2 124 66.1
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.3e-35 153.3 92 90.2
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 4.2e-34 148.3 129 62.8
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 9.3e-34 147.1 92 87.0
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 1.6e-33 146.4 125 68.0
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 4.6e-33 144.8 131 61.1
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 7.9e-33 144.1 131 60.3
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 1.0e-32 143.7 129 62.0
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 3.9e-32 141.7 125 65.6
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 5.1e-32 141.4 131 58.8
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 1.5e-31 139.8 130 63.1
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 1.9e-31 139.4 131 59.5
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 1.9e-31 139.4 132 59.8
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 1.9e-31 139.4 132 59.8
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 3.3e-31 138.7 132 59.8
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 3.3e-31 138.7 131 63.4
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 4.3e-31 138.3 130 57.7
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 4.3e-31 138.3 90 81.1
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 5.7e-31 137.9 131 59.5
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 5.7e-31 137.9 124 62.9
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 1.3e-30 136.7 133 62.4
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 1.3e-30 136.7 132 59.1
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 1.3e-30 136.7 132 59.1
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.1e-29 133.7 121 62.0
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 1.4e-29 133.3 101 75.2
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 2.4e-29 132.5 106 72.6
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 1.2e-28 130.2 131 56.5
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.5e-28 129.8 106 70.8
Atru.chr6.2428 Acer truncatum HOM05D003450 ORTHO05D004150 2.6e-28 129.0 83 79.5
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 7.7e-28 127.5 105 70.5
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 2.2e-27 125.9 131 55.7
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 5.0e-27 124.8 132 55.3
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 2.1e-25 119.4 131 53.4
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.5e-23 113.2 129 55.0
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 2.0e-23 112.8 97 62.9
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 5.7e-23 111.3 103 62.1
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 1.3e-22 110.2 120 55.0
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 2.8e-22 109.0 106 61.3
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 2.8e-22 109.0 132 51.5
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 2.8e-22 109.0 132 51.5
TPR.G33244 Trifolium pratense HOM05D003450 ORTHO05D004150 2.8e-22 109.0 103 62.1
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 4.8e-22 108.2 76 73.7
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.8e-21 106.3 104 61.5
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 5.3e-21 104.8 121 52.9
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 9.1e-21 104.0 120 51.7
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 2.2e-19 99.4 130 49.2
Zm00001eb367390 Zea mays HOM05D003450 ORTHO05D004150 6.5e-19 97.8 78 64.1
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 7.2e-18 94.4 118 49.2
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.5e-12 75.5 80 60.0
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 1.3e-11 73.6 64 62.5
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 3.0e-08 62.4 154 32.5
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 8.2e-06 54.3 43 67.4


User provided reference genes

Program Settings