Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 0.0e+00 1201.0 606 100.0
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.1e-205 719.5 733 58.7
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 7.5e-187 657.9 731 53.4
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 3.6e-181 639.0 717 53.1
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 4.0e-148 529.3 701 48.2
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 3.2e-137 493.0 734 44.1
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.1e-132 478.0 728 43.5
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.4e-130 468.8 716 42.2
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 8.4e-130 468.4 735 41.6
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 8.4e-130 468.4 736 42.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 7.9e-128 461.8 707 42.9
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.8e-127 460.7 732 41.4
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 2.0e-123 447.2 712 41.2
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.4e-123 446.4 742 41.5
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 3.4e-123 446.4 730 40.8
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 2.2e-122 443.7 659 44.5
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 2.2e-122 443.7 732 40.4
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 2.9e-122 443.4 718 41.4
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.1e-121 441.4 716 40.6
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.4e-121 441.0 665 44.2
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 5.5e-121 439.1 742 41.5
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 7.1e-121 438.7 719 41.9
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 4.6e-120 436.0 723 40.7
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 2.3e-119 433.7 711 39.9
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.1e-118 431.4 718 41.1
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 7.4e-118 428.7 725 40.8
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 8.2e-117 425.2 724 40.1
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 2.9e-114 416.8 713 41.0
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 2.9e-114 416.8 723 39.0
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.6e-112 411.0 724 39.8
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 3.5e-112 409.8 721 39.7
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.1e-112 409.1 731 39.0
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 3.0e-111 406.8 727 39.6
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.1e-110 404.8 765 37.3
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.5e-110 404.4 729 39.5
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.3e-110 403.3 706 40.5
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.3e-110 402.9 729 38.5
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.6e-109 401.0 730 39.3
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 8.2e-109 398.7 710 39.7
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 8.2e-109 398.7 715 38.3
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.8e-108 397.5 724 39.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.1e-108 396.7 713 39.6
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 5.3e-108 396.0 731 37.9
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.2e-107 394.8 711 39.8
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.0e-107 394.0 733 38.5
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 7.7e-107 392.1 711 39.7
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 3.2e-105 386.7 726 37.5
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 3.2e-105 386.7 661 40.8
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 5.5e-105 386.0 719 39.2
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 6.1e-104 382.5 728 37.5
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 7.9e-104 382.1 733 37.8
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 7.9e-104 382.1 678 39.2
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 2.8e-101 373.6 696 37.6
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.7e-101 373.2 732 35.4
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 8.2e-101 372.1 643 41.7
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 1.1e-100 371.7 727 37.1
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 9.1e-100 368.6 745 36.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.5e-99 367.9 728 36.1
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.6e-99 367.1 732 35.7
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.4e-99 366.7 688 37.8
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 5.5e-97 359.4 740 36.1
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 7.2e-97 359.0 716 38.7
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-96 358.2 725 36.1
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 1.2e-96 358.2 716 36.3
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.6e-96 357.8 723 35.8
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 2.1e-96 357.5 642 40.0
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.7e-96 357.1 761 34.7
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.7e-96 357.1 761 34.7
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.1e-94 351.7 708 36.0
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.1e-94 351.7 755 35.5
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 5.7e-94 349.4 723 35.3
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.4e-92 344.7 795 34.8
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.3e-90 338.2 607 37.7
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.1e-86 325.1 691 34.6
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 3.7e-77 293.5 297 58.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 3.7e-69 266.9 543 35.4
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.9e-65 254.6 274 52.9
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 1.2e-62 245.4 755 30.9
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 5.7e-62 243.0 335 45.7
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 2.4e-60 237.7 241 56.0
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 4.4e-54 216.9 309 43.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 6.4e-53 213.0 289 46.4
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 2.4e-52 211.1 311 40.5
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 4.6e-51 206.8 293 43.7
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.8e-48 197.6 285 43.9
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 7.1e-36 156.4 243 39.9
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 7.1e-36 156.4 248 40.7
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.7e-26 125.2 100 63.0
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 5.4e-20 103.6 153 43.1
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 9.3e-20 102.8 157 40.1
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.6e-16 92.0 461 24.7
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 9.0e-15 86.3 80 56.2
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 6.4e-13 80.1 87 48.3
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-09 69.3 167 32.3
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 1.1e-09 69.3 209 30.1
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 6.2e-08 63.5 158 32.3
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 1.2e-06 59.3 118 33.9
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.0e-05 56.2 115 33.0


User provided reference genes

Program Settings