Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.7e-174 613.6 327 100.0
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.3e-156 554.3 272 96.3
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.7e-148 529.6 274 90.1
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.1e-144 516.9 283 85.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.2e-144 515.0 283 85.5
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 4.7e-143 511.5 289 83.4
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.0e-142 508.8 292 81.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.4e-139 500.0 291 81.8
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.0e-139 497.7 277 83.0
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 9.1e-139 497.3 297 80.5
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.0e-138 496.1 299 79.9
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.7e-138 495.7 297 81.1
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 5.9e-138 494.6 269 84.8
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.7e-138 494.2 299 79.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.7e-137 493.0 316 75.3
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.8e-137 491.9 294 80.3
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 3.8e-137 491.9 311 75.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.0e-137 491.5 265 86.8
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.0e-137 491.5 265 86.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 5.0e-137 491.5 265 86.8
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 6.5e-137 491.1 265 87.2
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.1e-136 490.3 265 87.2
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.5e-136 489.2 292 79.8
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.5e-136 489.2 307 77.9
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.5e-136 489.2 297 79.1
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 5.5e-136 488.0 289 78.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 7.2e-136 487.6 298 78.2
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 7.2e-136 487.6 307 76.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.2e-135 486.9 290 80.7
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.6e-135 486.5 263 84.4
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.6e-135 486.5 288 79.9
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 2.1e-135 486.1 308 76.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.7e-135 485.7 266 84.2
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 3.6e-135 485.3 299 76.9
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.6e-135 485.3 261 85.1
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 4.7e-135 485.0 265 84.9
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 6.1e-135 484.6 298 77.9
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 6.1e-135 484.6 293 77.5
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 8.0e-135 484.2 265 84.5
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 8.0e-135 484.2 266 85.0
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 8.0e-135 484.2 268 84.0
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.8e-134 483.0 261 83.9
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.8e-134 483.0 294 78.6
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 3.0e-134 482.3 303 77.9
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 4.0e-134 481.9 261 83.5
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.0e-134 481.9 303 78.2
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 4.0e-134 481.9 276 81.2
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 6.8e-134 481.1 298 76.2
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 6.8e-134 481.1 287 81.5
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 8.8e-134 480.7 301 75.7
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.2e-133 480.3 294 77.9
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-133 479.9 292 78.4
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.5e-133 479.9 299 77.3
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 2.0e-133 479.6 299 77.9
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.6e-133 479.2 263 84.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.4e-133 478.8 304 76.0
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 3.4e-133 478.8 292 78.4
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 4.4e-133 478.4 263 84.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.4e-133 478.4 292 77.7
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.7e-133 478.0 301 75.1
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 7.5e-133 477.6 292 78.1
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.5e-133 477.6 294 78.6
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 9.8e-133 477.2 292 77.1
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 9.8e-133 477.2 305 75.1
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.2e-132 476.1 292 76.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.2e-132 476.1 304 76.0
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.2e-132 476.1 304 76.0
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.2e-132 476.1 265 82.3
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 2.8e-132 475.7 292 77.4
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.8e-132 475.7 295 77.3
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 4.8e-132 474.9 292 79.5
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 4.8e-132 474.9 312 75.6
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.3e-132 474.6 292 76.7
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 8.3e-132 474.2 291 76.6
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 8.3e-132 474.2 294 76.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.3e-132 474.2 304 74.7
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 8.3e-132 474.2 297 76.4
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.1e-131 473.8 293 78.2
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.1e-131 473.8 265 82.3
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.8e-131 473.0 296 76.0
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.4e-131 472.6 291 76.6
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.1e-131 472.2 262 82.1
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 3.1e-131 472.2 263 82.5
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 5.4e-131 471.5 291 76.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 5.4e-131 471.5 291 76.3
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 7.0e-131 471.1 257 84.4
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 7.0e-131 471.1 290 77.2
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.2e-130 470.3 299 74.6
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.2e-130 470.3 285 78.6
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 4.5e-130 468.4 258 83.7
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 5.9e-130 468.0 299 74.9
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.0e-129 467.2 293 75.1
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.3e-129 466.8 289 77.2
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.7e-129 466.5 266 81.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.3e-129 466.1 291 75.6
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.3e-129 466.1 290 75.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.9e-129 465.7 293 76.1
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.9e-129 465.7 286 75.9
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.9e-129 465.7 300 76.3
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.9e-129 465.7 260 82.3
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.1e-128 463.8 271 81.9
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.9e-128 463.0 289 76.1
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 3.3e-128 462.2 297 74.1
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 3.3e-128 462.2 242 88.8
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 4.2e-128 461.8 292 75.7
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 4.2e-128 461.8 292 75.7
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.2e-128 461.8 300 74.0
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-127 459.9 294 75.5
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 6.1e-127 458.0 242 86.8
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.0e-126 457.2 286 76.2
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 2.6e-125 452.6 298 73.2
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 4.4e-125 451.8 299 74.6
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 4.4e-125 451.8 299 74.6
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 2.2e-124 449.5 306 71.9
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 7.8e-122 441.0 233 87.6
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.0e-121 440.7 296 72.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.7e-121 439.9 290 70.7
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 9.5e-120 434.1 282 74.1
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 4.0e-118 428.7 263 77.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 9.2e-115 417.5 221 87.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 9.2e-115 417.5 216 87.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 9.2e-115 417.5 270 73.0
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 4.6e-114 415.2 287 73.2
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 5.0e-113 411.8 221 85.5
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 5.0e-113 411.8 268 72.8
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.5e-112 410.2 216 86.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.5e-112 407.5 213 88.3
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.4e-109 399.1 293 67.6
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 9.8e-109 397.5 293 66.9
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-107 394.0 208 88.0
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 2.3e-105 386.3 274 68.6
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 4.9e-100 368.6 233 75.5
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 9.2e-99 364.4 289 61.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.1e-98 363.2 218 75.7
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 3.2e-91 339.3 272 60.7
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.6e-82 308.9 197 76.1
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.1e-81 305.4 287 55.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-78 297.7 162 84.0
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 4.2e-75 285.8 151 87.4
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 9.6e-72 274.6 207 65.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.8e-71 273.1 218 63.8
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 6.9e-70 268.5 168 76.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 9.0e-70 268.1 149 81.9
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.1e-67 261.2 178 74.2
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.7e-66 256.5 151 79.5
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 5.1e-57 225.7 126 80.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.9e-51 207.2 147 66.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.8e-41 174.1 165 56.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.9e-20 103.6 84 61.9
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 7.2e-19 99.0 74 68.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.4e-14 84.0 49 73.5
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 7.0e-14 82.4 73 58.9
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 5.9e-13 79.3 69 58.0


User provided reference genes

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