Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010524 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D021229 8.7e-44 179.9 88 100.0
TWI23G1205 Tripterygium wilfordii HOM05D000038 ORTHO05D007763 1.1e-22 109.8 88 64.8
QL09p011998 Quercus lobata HOM05D000038 ORTHO05D007763 7.1e-22 107.1 85 65.9
QL09p012017 Quercus lobata HOM05D000038 ORTHO05D007763 3.5e-21 104.8 83 65.1
Rhsim03G0196500 Rhododendron simsii HOM05D000038 ORTHO05D007763 4.6e-21 104.4 88 60.2
PGSC0003DMG402028902 Solanum tuberosum HOM05D000038 ORTHO05D021229 1.3e-20 102.8 87 63.2
Peaxi162Scf00618g00531 Petunia axillaris HOM05D000038 ORTHO05D007763 2.3e-20 102.1 81 65.4
TAR629G2722 Trochodendron aralioides HOM05D000038 ORTHO05D007763 3.9e-20 101.3 81 66.7
vmacro06595 Vaccinium macrocarpon HOM05D000038 ORTHO05D007763 5.1e-20 100.9 85 58.8
Ciclev10006720m.g Citrus clementina HOM05D000038 ORTHO05D007763 6.7e-20 100.5 80 61.2
Prupe.2G304500 Prunus persica HOM05D000038 ORTHO05D007763 8.7e-20 100.1 77 66.2
HanXRQChr14g0462671 Helianthus annuus HOM05D000038 ORTHO05D007763 1.5e-19 99.4 81 58.0
GSVIVG01028787001 Vitis vinifera HOM05D000038 ORTHO05D007763 1.5e-19 99.4 84 57.1
Haze_00081 Corylus avellana HOM05D000038 ORTHO05D007763 2.5e-19 98.6 85 57.6
Manes.06G154800 Manihot esculenta HOM05D000038 ORTHO05D007763 2.5e-19 98.6 85 60.0
CiPaw.05G259900 Carya illinoinensis HOM05D000038 ORTHO05D007763 3.3e-19 98.2 80 61.2
MD07G1282400 Malus domestica HOM05D000038 ORTHO05D007763 4.3e-19 97.8 76 65.8
Solyc06g036470.3 Solanum lycopersicum HOM05D000038 ORTHO05D007763 4.3e-19 97.8 87 59.8
Glyma.20G164200 Glycine max HOM05D000038 ORTHO05D007763 2.2e-18 95.5 92 57.6
TAR375G0963 Trochodendron aralioides HOM05D000038 ORTHO05D007763 2.8e-18 95.1 84 59.5
MD01G1211900 Malus domestica HOM05D000038 ORTHO05D007763 3.7e-18 94.7 76 65.8
Lsat_1_v5_gn_2_133640 Lactuca sativa HOM05D000038 ORTHO05D007763 6.3e-18 94.0 81 56.8
Cc02_g02140 Coffea canephora HOM05D000038 ORTHO05D007763 8.2e-18 93.6 74 64.9
Sed0000682 Sechium edule HOM05D000038 ORTHO05D007763 8.2e-18 93.6 86 59.3
Nitab4.5_0000015g0050 Nicotiana tabacum HOM05D000038 ORTHO05D007763 1.1e-17 93.2 77 62.3
Cfa016330 Carpinus fangiana HOM05D000038 ORTHO05D007763 1.8e-17 92.4 83 55.4
Nitab4.5_0001748g0040 Nicotiana tabacum HOM05D000038 ORTHO05D007763 1.8e-17 92.4 82 58.5
COL.COLO4_30254 Corchorus olitorius HOM05D000038 ORTHO05D007763 3.1e-17 91.7 73 61.6
Duzib205G0819 Durio zibethinus HOM05D000038 ORTHO05D007763 3.1e-17 91.7 80 56.2
FAN01G1943 Fragaria x ananassa HOM05D000038 ORTHO05D007763 4.1e-17 91.3 76 56.6
FAN06G4281 Fragaria x ananassa HOM05D000038 ORTHO05D007763 4.1e-17 91.3 76 56.6
Sabra15G0021900 Salix brachista HOM05D000038 ORTHO05D007763 5.3e-17 90.9 63 68.3
CAN.G204.9 Capsicum annuum HOM05D000038 ORTHO05D007763 6.9e-17 90.5 81 59.3
HanXRQChr07g0207111 Helianthus annuus HOM05D000038 ORTHO05D007763 6.9e-17 90.5 82 53.7
Lalb_Chr21g0305331 Lupinus albus HOM05D000038 ORTHO05D007763 6.9e-17 90.5 85 55.3
Medtr1g099400 Medicago truncatula HOM05D000038 ORTHO05D007763 6.9e-17 90.5 64 67.2
Solyc03g007790.3 Solanum lycopersicum HOM05D000038 ORTHO05D007763 6.9e-17 90.5 78 59.0
Sopen03g003720 Solanum pennellii HOM05D000038 ORTHO05D007763 6.9e-17 90.5 77 59.7
FAN06G2185 Fragaria x ananassa HOM05D000038 ORTHO05D007763 9.0e-17 90.1 76 55.3
Peaxi162Scf00904g00476 Petunia axillaris HOM05D000038 ORTHO05D007763 9.0e-17 90.1 82 59.8
RcHm_v2.0_Chr1g0379601 Rosa chinensis HOM05D000038 ORTHO05D007763 9.0e-17 90.1 85 54.1
Atru.chr1.319 Acer truncatum HOM05D000038 ORTHO05D007763 1.2e-16 89.7 91 53.8
Sabra15G0019400 Salix brachista HOM05D000038 ORTHO05D007763 1.2e-16 89.7 78 62.8
Migut.F00260 Erythranthe guttata HOM05D000038 ORTHO05D007763 1.5e-16 89.4 63 68.3
Thecc.03G188700 Theobroma cacao HOM05D000038 ORTHO05D007763 1.5e-16 89.4 80 56.2
TPR.G7756 Trifolium pratense HOM05D000038 ORTHO05D007763 2.0e-16 89.0 87 54.0
Gohir.A12G254400 Gossypium hirsutum HOM05D000038 ORTHO05D007763 3.4e-16 88.2 80 58.8
Gohir.D12G254900 Gossypium hirsutum HOM05D000038 ORTHO05D007763 3.4e-16 88.2 80 58.8
Gorai.008G272500 Gossypium raimondii HOM05D000038 ORTHO05D007763 3.4e-16 88.2 80 58.8
CANSAT21G0675 Cannabis sativa HOM05D000038 ORTHO05D007763 5.9e-16 87.4 66 63.6
CANSAT21G2400 Cannabis sativa HOM05D000038 ORTHO05D007763 5.9e-16 87.4 66 63.6
Glyma.10G228900 Glycine max HOM05D000038 ORTHO05D007763 5.9e-16 87.4 79 55.7
Nitab4.5_0002176g0010 Nicotiana tabacum HOM05D000038 ORTHO05D007763 7.7e-16 87.0 77 59.7
Lj5g0012672 Lotus japonicus HOM05D000038 ORTHO05D007763 1.0e-15 86.7 90 52.2
Nitab4.5_0002340g0030 Nicotiana tabacum HOM05D000038 ORTHO05D007763 1.0e-15 86.7 80 57.5
Potri.015G026300 Populus trichocarpa HOM05D000038 ORTHO05D007763 1.0e-15 86.7 78 59.0
Hund11700 Selenicereus undatus HOM05D000038 ORTHO05D007763 1.3e-15 86.3 85 56.5
THA.LOC104798912 Tarenaya hassleriana HOM05D000038 ORTHO05D007763 1.3e-15 86.3 76 60.5
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.7e-15 85.9 78 55.1
PGR042G3083 Punica granatum HOM05D000038 ORTHO05D007763 1.7e-15 85.9 66 59.1
DCAR_014526 Daucus carota HOM05D000038 ORTHO05D007763 2.9e-15 85.1 58 70.7
Sc13g0009400 Simmondsia chinensis HOM05D000038 ORTHO05D007763 3.8e-15 84.7 63 63.5
MBI06_g38103_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D021229 6.5e-15 84.0 87 54.0
MBI06_g43279_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D021229 8.5e-15 83.6 86 53.5
Phvul.007G077300 Phaseolus vulgaris HOM05D000038 ORTHO05D007763 8.5e-15 83.6 91 53.8
Ah.07g206290 Amaranthus hybridus HOM05D000038 ORTHO05D007763 1.4e-14 82.8 64 59.4
FvH4_7g30670 Fragaria vesca HOM05D000038 ORTHO05D007763 1.4e-14 82.8 64 59.4
EL10Ac3g05376 Beta vulgaris HOM05D000038 ORTHO05D007763 2.5e-14 82.0 60 58.3
ECA238G4568 Erigeron canadensis HOM05D000038 ORTHO05D007763 2.5e-14 82.0 86 53.5
arahy.Tifrunner.gnm1.ann1.S9URI0 Arachis hypogaea HOM05D000038 ORTHO05D007763 3.2e-14 81.6 67 61.2
arahy.Tifrunner.gnm1.ann1.G4Z2H5 Arachis hypogaea HOM05D000038 ORTHO05D007763 4.2e-14 81.3 67 61.2
BcaNung01823 Brassica carinata HOM05D000038 ORTHO05D007763 4.2e-14 81.3 84 56.0
Eucgr.A02679 Eucalyptus grandis HOM05D000038 ORTHO05D007763 4.2e-14 81.3 64 59.4
FAN10G4313 Fragaria x ananassa HOM05D000038 ORTHO05D007763 4.2e-14 81.3 86 48.8
Carub.0006s2180 Capsella rubella HOM05D000038 ORTHO05D007763 5.5e-14 80.9 86 53.5
ClCG05G008550 Citrullus lanatus HOM05D000038 ORTHO05D007763 5.5e-14 80.9 86 47.7
PSO384G4191 Papaver somniferum HOM05D000038 ORTHO05D007763 5.5e-14 80.9 88 48.9
Aqoxy7G00193 Aquilegia oxysepala HOM05D000038 ORTHO05D007763 7.2e-14 80.5 64 56.2
MELO3C006961.2 Cucumis melo HOM05D000038 ORTHO05D007763 7.2e-14 80.5 87 47.1
AL6G35430 Arabidopsis lyrata HOM05D000038 ORTHO05D007763 9.4e-14 80.1 82 53.7
A06p34870 Brassica napus HOM05D000038 ORTHO05D007763 9.4e-14 80.1 83 51.8
C07p43650 Brassica napus HOM05D000038 ORTHO05D007763 9.4e-14 80.1 83 51.8
BolC7t44894H Brassica oleracea HOM05D000038 ORTHO05D007763 9.4e-14 80.1 83 51.8
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.6e-13 79.3 64 56.2
Sp2g23240 Schrenkiella parvula HOM05D000038 ORTHO05D007763 2.7e-13 78.6 81 50.6
BraA06t26413Z Brassica rapa HOM05D000038 ORTHO05D007763 3.6e-13 78.2 83 50.6
ATR1131G018 Amborella trichopoda HOM05D000038 ORTHO05D021229 4.6e-13 77.8 80 46.2
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 4.6e-13 77.8 63 57.1
MBI07_g42961_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D007763 6.1e-13 77.4 86 47.7
BcaNung01207 Brassica carinata HOM05D000038 ORTHO05D007763 1.0e-12 76.6 81 49.4
SalBow4G0049 Salvia bowleyana HOM05D000038 ORTHO05D007763 1.0e-12 76.6 54 64.8
CARHR189510 Cardamine hirsuta HOM05D000038 ORTHO05D007763 8.8e-12 73.6 81 46.9
PSO135G0641 Papaver somniferum HOM05D000038 ORTHO05D007763 8.8e-12 73.6 65 52.3
Hund04811 Selenicereus undatus HOM05D000038 ORTHO05D007763 8.8e-12 73.6 83 53.0
SEGI_10828 Sequoiadendron giganteum HOM05D000038 ORTHO05D007763 2.0e-11 72.4 60 48.3
HPP92_021549 Vanilla planifolia HOM05D000038 ORTHO05D007763 3.1e-09 65.1 85 45.9
HPP92_021540 Vanilla planifolia HOM05D000038 ORTHO05D007763 6.9e-09 63.9 85 45.9
MBI17_g19516_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 4.5e-08 61.2 88 45.5
Nn1g06135 Nelumbo nucifera HOM05D000038 ORTHO05D000143 7.7e-08 60.5 81 44.4
RcHm_v2.0_Chr5g0078561 Rosa chinensis HOM05D000038 ORTHO05D000143 7.7e-08 60.5 76 42.1
RcHm_v2.0_Chr5g0078621 Rosa chinensis HOM05D000038 ORTHO05D000143 7.7e-08 60.5 76 43.4
Duzib041G0552 Durio zibethinus HOM05D000038 ORTHO05D000143 1.3e-07 59.7 78 39.7
MBI04_g36446_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 2.2e-07 58.9 56 44.6
TAR362G0060 Trochodendron aralioides HOM05D000038 ORTHO05D000143 2.2e-07 58.9 57 49.1
MBI04_g14208_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 2.9e-07 58.5 88 40.9
RcHm_v2.0_Chr5g0078641 Rosa chinensis HOM05D000038 ORTHO05D000143 2.9e-07 58.5 76 42.1
Manes.03G180100 Manihot esculenta HOM05D000038 ORTHO05D000143 3.8e-07 58.2 60 46.7
GSVIVG01017953001 Vitis vinifera HOM05D000038 ORTHO05D000143 3.8e-07 58.2 60 50.0
Ciclev10014324m.g Citrus clementina HOM05D000038 ORTHO05D000143 5.0e-07 57.8 85 44.7
Manes.03G179900 Manihot esculenta HOM05D000038 ORTHO05D000143 6.5e-07 57.4 77 40.3
ATR1128G059 Amborella trichopoda HOM05D000038 ORTHO05D000143 8.5e-07 57.0 81 39.5
QL10p041679 Quercus lobata HOM05D000038 ORTHO05D000143 1.1e-06 56.6 60 46.7
QL10p041859 Quercus lobata HOM05D000038 ORTHO05D000143 1.1e-06 56.6 60 46.7
TAR369G0571 Trochodendron aralioides HOM05D000038 ORTHO05D000143 1.1e-06 56.6 62 46.8
CiPaw.13G167800 Carya illinoinensis HOM05D000038 ORTHO05D000143 1.4e-06 56.2 76 38.2
Duzib116G0827 Durio zibethinus HOM05D000038 ORTHO05D000143 1.9e-06 55.8 87 36.8
Manes.06G169200 Manihot esculenta HOM05D000038 ORTHO05D000143 1.9e-06 55.8 79 39.2
Manes.08G073101 Manihot esculenta HOM05D000038 ORTHO05D000143 1.9e-06 55.8 79 39.2
Potri.T085000 Populus trichocarpa HOM05D000038 ORTHO05D000143 1.9e-06 55.8 61 47.5
QL04p002405 Quercus lobata HOM05D000038 ORTHO05D000143 1.9e-06 55.8 60 45.0
RcHm_v2.0_Chr6g0276461 Rosa chinensis HOM05D000038 ORTHO05D000143 1.9e-06 55.8 76 34.2
Cfa009665 Carpinus fangiana HOM05D000038 ORTHO05D000143 2.5e-06 55.5 57 49.1
Hma1.2p1_0745F.1_g211960 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 2.5e-06 55.5 60 48.3
Ciclev10007028m.g Citrus clementina HOM05D000038 ORTHO05D000143 3.2e-06 55.1 60 43.3
COL.COLO4_38442 Corchorus olitorius HOM05D000038 ORTHO05D000143 3.2e-06 55.1 82 40.2
Oeu043764.1 Olea europaea HOM05D000038 ORTHO05D000143 3.2e-06 55.1 86 37.2
RcHm_v2.0_Chr5g0078421 Rosa chinensis HOM05D000038 ORTHO05D000143 3.2e-06 55.1 77 35.1
RcHm_v2.0_Chr5g0078791 Rosa chinensis HOM05D000038 ORTHO05D000143 3.2e-06 55.1 77 35.1
Atru.ctg752_3.99 Acer truncatum HOM05D000038 ORTHO05D000143 4.2e-06 54.7 62 41.9
Nn1g06141 Nelumbo nucifera HOM05D000038 ORTHO05D000143 4.2e-06 54.7 78 38.5
Prupe.6G016700 Prunus persica HOM05D000038 ORTHO05D000143 4.2e-06 54.7 52 46.2
Prupe.6G017400 Prunus persica HOM05D000038 ORTHO05D000143 4.2e-06 54.7 52 46.2
RcHm_v2.0_Chr6g0276421 Rosa chinensis HOM05D000038 ORTHO05D000143 4.2e-06 54.7 76 34.2
SEGI_09431 Sequoiadendron giganteum HOM05D000038 ORTHO05D006286 4.2e-06 54.7 80 36.2
Manes.10G150500 Manihot esculenta HOM05D000038 ORTHO05D000143 5.5e-06 54.3 59 45.8
Oeu043758.1 Olea europaea HOM05D000038 ORTHO05D000143 5.5e-06 54.3 86 37.2
PSO063G2245 Papaver somniferum HOM05D000038 ORTHO05D000143 5.5e-06 54.3 46 47.8
CAN.G907.10 Capsicum annuum HOM05D000038 ORTHO05D000143 7.2e-06 53.9 75 41.3
Cfa009661 Carpinus fangiana HOM05D000038 ORTHO05D000143 7.2e-06 53.9 57 47.4
DCAR_029447 Daucus carota HOM05D000038 ORTHO05D000143 7.2e-06 53.9 77 40.3
HanXRQChr02g0048321 Helianthus annuus HOM05D000038 ORTHO05D000143 7.2e-06 53.9 79 41.8
Nn1g06146 Nelumbo nucifera HOM05D000038 ORTHO05D000143 7.2e-06 53.9 83 38.6
PSO782G4880 Papaver somniferum HOM05D000038 ORTHO05D000143 7.2e-06 53.9 63 41.3
Rhsim07G0117400 Rhododendron simsii HOM05D000038 ORTHO05D000143 7.2e-06 53.9 63 46.0
RcHm_v2.0_Chr5g0078681 Rosa chinensis HOM05D000038 ORTHO05D000143 7.2e-06 53.9 59 42.4
RcHm_v2.0_Chr5g0078741 Rosa chinensis HOM05D000038 ORTHO05D000143 7.2e-06 53.9 59 42.4
TAR369G0056 Trochodendron aralioides HOM05D000038 ORTHO05D000143 7.2e-06 53.9 73 39.7
Ah.11g040360 Amaranthus hybridus HOM05D000038 ORTHO05D000143 9.4e-06 53.5 60 40.0
ClCG05G005240 Citrullus lanatus HOM05D000038 ORTHO05D000143 9.4e-06 53.5 64 42.2
RcHm_v2.0_Chr5g0078951 Rosa chinensis HOM05D000038 ORTHO05D000143 9.4e-06 53.5 59 42.4


User provided reference genes

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