Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.0e-27 124.4 61 100.0
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.0e-27 124.4 61 100.0
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 4.2e-13 77.4 40 87.5
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 4.2e-13 77.4 40 90.0
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 2.1e-12 75.1 49 73.5
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 3.6e-12 74.3 38 89.5
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 3.6e-12 74.3 40 85.0
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 6.1e-12 73.6 47 74.5
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.0e-11 72.8 40 85.0
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.4e-11 72.4 40 82.5
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.4e-11 72.4 40 82.5
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 1.8e-11 72.0 40 80.0
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.8e-11 72.0 40 82.5
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 2.3e-11 71.6 40 85.0
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 2.3e-11 71.6 40 77.5
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.3e-11 71.6 40 80.0
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 2.3e-11 71.6 40 80.0
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 2.3e-11 71.6 38 84.2
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 3.0e-11 71.2 38 86.8
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 3.0e-11 71.2 40 77.5
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 5.1e-11 70.5 38 86.8
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 5.1e-11 70.5 38 84.2
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.1e-10 69.3 38 84.2
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 1.1e-10 69.3 38 81.6
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 1.5e-10 68.9 38 84.2
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.5e-10 68.9 40 75.0
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 1.5e-10 68.9 40 80.0
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 1.5e-10 68.9 40 77.5
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 1.5e-10 68.9 40 77.5
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 1.5e-10 68.9 38 78.9
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 1.5e-10 68.9 47 68.1
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 2.0e-10 68.6 40 77.5
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 2.6e-10 68.2 38 81.6
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 2.6e-10 68.2 38 78.9
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 3.3e-10 67.8 40 77.5
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 3.3e-10 67.8 38 81.6
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 3.3e-10 67.8 38 81.6
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 3.3e-10 67.8 38 78.9
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 3.3e-10 67.8 40 72.5
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 4.4e-10 67.4 38 78.9
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 4.4e-10 67.4 38 76.3
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 4.4e-10 67.4 40 77.5
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 4.4e-10 67.4 38 76.3
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 5.7e-10 67.0 38 78.9
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 5.7e-10 67.0 38 81.6
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 9.7e-10 66.2 38 76.3
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 1.3e-09 65.9 40 77.5
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 1.3e-09 65.9 38 78.9
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 1.3e-09 65.9 49 61.2
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 1.7e-09 65.5 47 63.8
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 2.2e-09 65.1 38 76.3
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 2.2e-09 65.1 38 73.7
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 2.2e-09 65.1 49 63.3
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 2.8e-09 64.7 40 70.0
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 2.8e-09 64.7 38 71.1
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 3.7e-09 64.3 40 70.0
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.7e-09 64.3 36 80.6
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.7e-09 64.3 36 80.6
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.7e-09 64.3 36 80.6
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 3.7e-09 64.3 38 71.1
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 4.8e-09 63.9 38 73.7
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 6.3e-09 63.5 40 72.5
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 6.3e-09 63.5 38 73.7
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 6.3e-09 63.5 38 73.7
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 6.3e-09 63.5 35 77.1
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 8.2e-09 63.2 40 70.0
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.1e-08 62.8 36 77.8
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.1e-08 62.8 40 70.0
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.1e-08 62.8 40 70.0
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 1.1e-08 62.8 38 71.1
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 1.4e-08 62.4 38 73.7
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 1.8e-08 62.0 32 78.1
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.8e-08 62.0 36 77.8
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.8e-08 62.0 38 71.1
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 2.4e-08 61.6 38 68.4
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 2.4e-08 61.6 36 72.2
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 2.4e-08 61.6 40 70.0
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 2.4e-08 61.6 38 68.4
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 2.4e-08 61.6 42 64.3
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 3.1e-08 61.2 38 71.1
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 3.1e-08 61.2 35 71.4
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 3.1e-08 61.2 38 71.1
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 3.1e-08 61.2 40 67.5
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 3.1e-08 61.2 38 71.1
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 4.1e-08 60.8 38 68.4
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 4.1e-08 60.8 38 68.4
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 4.1e-08 60.8 38 68.4
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 5.3e-08 60.5 40 67.5
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 5.3e-08 60.5 38 65.8
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 5.3e-08 60.5 37 67.6
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 6.9e-08 60.1 38 65.8
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 6.9e-08 60.1 38 65.8
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 9.1e-08 59.7 38 65.8
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 9.1e-08 59.7 38 65.8
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.5e-07 58.9 36 69.4
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 1.5e-07 58.9 37 67.6
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 2.0e-07 58.5 38 68.4
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 2.0e-07 58.5 38 65.8
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 1.0e-06 56.2 36 66.7
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 1.3e-06 55.8 40 60.0
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 3.8e-06 54.3 38 60.5
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 3.8e-06 54.3 38 57.9


User provided reference genes

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