Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.2e-100 369.0 192 100.0
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.2e-100 369.0 192 100.0
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.5e-64 250.0 202 68.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.0e-57 227.3 204 67.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.8e-57 226.5 208 67.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.0e-53 213.0 204 61.8
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 4.5e-53 211.8 167 74.9
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 7.7e-53 211.1 201 62.2
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 2.2e-52 209.5 209 59.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 3.8e-52 208.8 206 66.0
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.4e-51 206.8 208 62.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.1e-50 203.0 196 60.7
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 2.7e-50 202.6 205 60.0
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 3.6e-50 202.2 205 62.0
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 3.6e-50 202.2 208 63.5
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.7e-50 201.8 207 62.8
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.0e-49 200.7 226 60.2
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 8.8e-49 197.6 199 61.3
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.1e-48 197.2 202 56.9
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.6e-48 196.1 205 60.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 1.4e-46 190.3 208 59.6
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 7.0e-46 188.0 202 57.4
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.2e-45 187.2 205 57.1
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 5.9e-45 184.9 204 56.9
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.7e-44 183.3 205 57.1
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.7e-44 183.3 213 55.9
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 3.8e-44 182.2 226 54.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 5.0e-44 181.8 205 55.6
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.0e-44 181.8 203 57.6
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.9e-43 179.9 204 57.4
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 4.2e-43 178.7 203 52.7
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 5.5e-43 178.3 208 52.4
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.7e-42 176.0 218 55.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.6e-42 175.6 202 55.0
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.4e-41 173.7 207 53.6
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.8e-41 173.3 204 53.9
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.8e-41 173.3 206 58.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.0e-41 172.6 199 57.8
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.7e-41 171.4 201 55.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.8e-41 171.0 213 51.6
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.0e-40 169.9 200 54.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 3.3e-40 169.1 205 54.1
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 5.7e-40 168.3 201 55.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 7.4e-40 167.9 221 49.8
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.7e-39 166.8 206 51.9
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.7e-39 166.8 210 55.7
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 3.7e-39 165.6 212 54.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.2e-39 164.5 213 49.8
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.1e-38 164.1 210 52.9
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.1e-38 164.1 210 52.4
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 4.1e-38 162.2 208 57.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 9.1e-38 161.0 136 66.2
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.2e-37 160.6 215 50.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.2e-37 160.6 207 49.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.6e-37 159.5 200 52.0
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.9e-37 158.3 203 53.7
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.9e-37 158.3 201 51.7
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.7e-37 157.9 201 47.3
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.0e-36 157.5 193 56.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.0e-36 157.5 200 53.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.9e-36 156.0 216 51.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.9e-36 156.0 204 52.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.9e-36 156.0 199 53.3
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.0e-36 155.2 213 49.3
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.0e-36 155.2 216 51.9
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.5e-36 154.8 212 50.5
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.5e-36 154.8 218 50.9
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-35 154.1 217 51.2
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-35 154.1 189 56.1
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.9e-35 153.3 199 55.3
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 3.2e-35 152.5 206 46.1
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.2e-35 152.5 208 48.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.2e-35 152.1 211 52.1
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 4.2e-35 152.1 208 48.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.2e-34 150.6 205 47.8
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.6e-34 150.2 227 49.8
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.7e-34 149.4 198 49.5
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 4.7e-34 148.7 204 49.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 6.1e-34 148.3 216 45.8
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 8.0e-34 147.9 207 48.8
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.0e-33 147.5 153 58.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 4.0e-33 145.6 214 46.7
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.2e-33 145.2 210 46.2
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 6.7e-33 144.8 207 45.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-32 143.7 204 47.1
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-32 143.7 204 47.1
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-32 143.7 204 47.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.3e-32 142.5 217 44.7
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.4e-32 142.1 213 45.5
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.7e-32 141.7 207 45.9
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 5.7e-32 141.7 202 50.5
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 7.5e-32 141.4 207 44.9
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 7.5e-32 141.4 207 44.9
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 7.5e-32 141.4 221 46.2
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 7.5e-32 141.4 198 46.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 9.7e-32 141.0 204 46.6
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.7e-31 139.0 207 43.5
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.7e-31 139.0 207 43.5
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.8e-31 138.7 226 47.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 8.2e-31 137.9 202 43.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 4.1e-30 135.6 208 44.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.0e-29 133.3 213 44.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 3.5e-29 132.5 202 43.1
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 5.9e-29 131.7 202 43.1
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 5.9e-29 131.7 207 47.8
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 7.7e-29 131.3 214 43.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-28 131.0 202 42.6
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.0e-28 131.0 207 44.9
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.0e-28 131.0 174 52.9
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.0e-28 131.0 207 44.9
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.3e-28 130.6 217 42.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.7e-28 130.2 150 55.3
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.2e-28 129.8 215 47.9
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.9e-28 129.4 204 43.6
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 6.5e-28 128.3 197 44.2
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 6.5e-28 128.3 206 42.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 6.5e-28 128.3 217 42.9
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 8.5e-28 127.9 197 45.2
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 3.2e-27 125.9 219 43.8
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.2e-27 125.9 154 55.2
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.2e-27 125.6 173 48.6
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.6e-26 123.6 199 44.2
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.6e-26 123.6 201 43.3
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.7e-26 122.9 213 44.1
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.0e-25 120.9 207 40.6
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.4e-25 120.6 149 49.7
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.3e-25 119.8 213 45.5
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 6.8e-25 118.2 207 43.5
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.5e-24 117.1 200 41.0
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.4e-24 115.5 201 39.8
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.5e-24 114.8 96 62.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-23 112.8 207 40.1
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.8e-23 112.8 154 49.4
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-22 110.9 210 40.0
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-22 110.5 208 42.8
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.8e-22 110.2 199 42.7
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.4e-22 109.8 173 43.4
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.4e-22 109.8 193 43.5
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.4e-22 109.8 207 41.5
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-22 109.4 207 38.2
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 9.1e-22 107.8 198 40.9
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.2e-21 107.5 206 38.8
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-21 106.7 210 41.9
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.0e-21 106.7 210 41.9
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 5.9e-21 105.1 207 37.2
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 7.7e-21 104.8 178 37.6
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.3e-20 104.0 180 41.1
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 6.6e-20 101.7 209 41.1
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.5e-19 99.8 218 39.9
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 4.2e-19 99.0 199 38.7
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 5.5e-19 98.6 204 40.7
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.2e-19 98.2 210 35.2
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 7.2e-19 98.2 166 45.2
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 4.7e-18 95.5 205 39.5
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 4.7e-18 95.5 204 40.2
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 6.1e-18 95.1 187 40.1
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.3e-17 93.2 115 45.2
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 8.9e-17 91.3 132 48.5
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.2e-16 90.9 122 49.2
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.5e-16 90.5 204 40.2
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.0e-16 90.1 131 51.9
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.4e-16 89.0 91 59.3
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-15 87.4 116 47.4
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.3e-15 87.4 207 35.7
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 4.5e-13 79.0 119 46.2
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.0e-12 77.8 215 34.4
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.3e-12 77.4 137 39.4
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.8e-12 75.9 118 48.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.9e-11 73.6 206 32.0
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 4.7e-10 68.9 197 36.5
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 4.7e-10 68.9 197 37.1
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 6.1e-10 68.6 173 39.3
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.0e-09 67.8 78 55.1
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.0e-09 67.8 164 33.5
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.2e-08 64.3 62 56.5
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 4.4e-08 62.4 193 33.2
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 4.4e-08 62.4 211 35.5
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-07 60.5 47 63.8
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 3.2e-06 56.2 196 36.2
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 4.1e-06 55.8 86 43.0


User provided reference genes

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