Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 0.0e+00 1488.0 810 100.0
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 0.0e+00 1430.6 810 96.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.9e-108 397.9 910 40.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.2e-96 356.3 888 39.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.1e-63 247.7 860 35.1
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.0e-45 189.5 1061 29.2
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 5.7e-41 173.7 834 31.7
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.8e-39 168.7 131 75.6
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 3.8e-37 161.0 207 53.1
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 3.8e-37 161.0 344 43.6
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.2e-35 156.0 837 30.6
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.3e-34 151.8 471 35.2
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.2e-34 150.6 838 28.6
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.2e-33 149.4 507 31.6
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.0e-33 148.7 366 35.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.2e-32 145.2 362 35.4
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.9e-32 144.1 380 35.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.3e-32 143.7 861 29.7
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.3e-32 143.7 378 35.7
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 6.3e-32 143.7 428 31.3
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.5e-30 137.9 847 28.9
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.0e-29 136.3 857 28.2
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.9e-29 134.8 535 29.9
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.5e-28 132.5 357 37.3
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.5e-28 132.5 828 29.1
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.8e-27 128.3 283 39.2
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.6e-27 127.9 846 29.3
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 4.7e-27 127.5 847 27.7
Actinidia04568 Actinidia chinensis HOM05D004299 ORTHO05D003557 8.0e-27 126.7 497 32.6
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 6.8e-26 123.6 375 33.9
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.8e-26 123.6 1031 25.9
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.5e-25 122.5 295 38.3
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.4e-25 121.3 233 42.5
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 7.5e-25 120.2 128 52.3
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.2e-24 118.6 302 35.4
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-23 116.3 845 27.9
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.4e-23 115.2 861 27.3
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.2e-23 114.8 806 27.0
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 4.1e-23 114.4 310 34.2
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 5.4e-23 114.0 486 30.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 5.4e-23 114.0 826 28.3
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 7.0e-23 113.6 298 35.9
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 9.2e-23 113.2 298 35.6
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.2e-22 112.8 215 39.5
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 3.5e-22 111.3 837 27.6
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.6e-22 110.9 315 35.9
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 5.9e-22 110.5 446 30.5
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.9e-22 110.5 832 26.7
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 7.8e-22 110.2 377 32.4
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 7.8e-22 110.2 881 25.7
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 7.8e-22 110.2 309 35.0
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.0e-21 109.8 372 33.9
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.3e-21 109.4 352 34.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.7e-21 109.0 334 34.1
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 8.6e-21 106.7 285 37.9
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.1e-20 106.3 836 27.0
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 4.3e-20 104.4 875 28.2
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 4.3e-20 104.4 363 33.9
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 7.3e-20 103.6 836 26.4
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 9.5e-20 103.2 624 27.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.2e-19 102.8 129 48.1
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.6e-19 102.4 330 32.4
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 6.2e-19 100.5 557 28.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 8.0e-19 100.1 289 34.9
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-18 99.4 269 34.6
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.4e-18 99.4 267 34.1
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.4e-18 99.4 320 30.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.1e-18 98.2 248 36.7
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.1e-18 98.2 305 33.8
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 3.1e-18 98.2 817 26.2
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 3.1e-18 98.2 980 24.8
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.2e-18 97.4 869 26.0
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.2e-18 97.4 320 32.8
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.8e-18 97.1 361 29.9
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 6.8e-18 97.1 677 28.7
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 6.8e-18 97.1 144 51.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.8e-18 97.1 473 27.5
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 6.8e-18 97.1 846 26.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 8.9e-18 96.7 257 36.2
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.5e-17 95.9 867 26.6
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.0e-17 95.5 364 33.0
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.6e-17 95.1 811 25.6
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 5.8e-17 94.0 320 33.1
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 7.5e-17 93.6 337 32.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 7.5e-17 93.6 337 32.0
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.3e-16 92.8 605 28.6
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-16 92.0 371 30.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 2.9e-16 91.7 323 32.8
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 2.9e-16 91.7 323 32.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 2.9e-16 91.7 476 29.0
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 3.7e-16 91.3 522 26.6
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 6.4e-16 90.5 214 37.9
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.3e-16 90.1 163 35.6
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.1e-15 89.7 647 27.2
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.4e-15 89.4 384 30.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.4e-15 89.4 348 32.5
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.9e-15 89.0 472 29.0
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.9e-15 89.0 599 24.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 3.2e-15 88.2 157 38.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 3.2e-15 88.2 157 38.9
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 5.4e-15 87.4 424 28.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 5.4e-15 87.4 477 26.8
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.4e-15 87.4 288 34.0
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 9.2e-15 86.7 609 25.0
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.0e-14 85.5 241 32.0
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.5e-14 84.7 492 25.4
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 4.6e-14 84.3 532 26.3
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.6e-14 84.3 699 26.9
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 4.6e-14 84.3 463 25.7
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.0e-13 83.2 509 25.7
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-13 82.8 330 32.7
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.7e-13 82.4 817 27.5
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.3e-13 82.0 587 23.9
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 3.0e-13 81.6 714 25.5
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.9e-13 81.3 582 24.7
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 3.9e-13 81.3 226 33.6
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.6e-13 80.5 361 31.6
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.6e-13 80.5 362 30.7
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 7.3e-12 77.0 819 26.1
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.1e-11 75.5 109 48.6
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.2e-11 73.9 65 55.4
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.1e-11 73.6 595 23.5
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.8e-10 72.4 322 30.4
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 4.0e-10 71.2 300 29.3
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.8e-10 70.5 331 31.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.7e-08 65.9 39 76.9
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 4.9e-08 64.3 209 34.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 8.3e-08 63.5 779 25.7
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.1e-07 63.2 43 69.8
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.4e-07 62.8 363 25.1
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.4e-07 62.8 99 45.5
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-07 62.8 38 73.7
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-07 62.8 38 73.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 4.1e-07 61.2 347 31.1
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 5.4e-07 60.8 222 34.2
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 5.4e-07 60.8 35 77.1
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 7.1e-07 60.5 878 23.7
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.1e-07 60.5 347 29.1
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 1.2e-06 59.7 290 26.9
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 1.6e-06 59.3 295 27.8
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 2.1e-06 58.9 243 31.3
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 2.1e-06 58.9 177 29.9
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 2.7e-06 58.5 836 26.8
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.5e-06 58.2 81 43.2
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 4.6e-06 57.8 116 36.2
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 4.6e-06 57.8 161 32.3
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 7.8e-06 57.0 61 52.5
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 7.8e-06 57.0 819 23.1


User provided reference genes

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