Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 0.0e+00 1283.9 638 100.0
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.3e-310 1067.4 687 81.5
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.4e-254 881.7 719 65.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.7e-251 872.1 694 66.6
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 6.5e-250 867.5 652 68.3
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 4.5e-243 844.7 687 63.2
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 3.8e-242 841.6 692 62.6
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 4.0e-231 805.1 696 60.3
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 5.2e-231 804.7 696 59.3
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 4.6e-227 791.6 692 59.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 6.0e-227 791.2 690 59.4
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.0e-226 790.4 690 60.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.0e-226 790.4 693 59.9
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.3e-226 789.3 689 58.2
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 9.5e-225 783.9 693 58.7
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.2e-224 783.5 683 59.3
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.1e-223 780.4 692 59.1
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.4e-223 780.0 693 58.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 4.4e-222 775.0 701 57.5
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.3e-221 773.5 706 57.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.7e-221 773.1 681 58.1
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.4e-220 770.0 689 57.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 7.1e-220 767.7 690 55.2
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 7.8e-219 764.2 683 58.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.9e-218 761.9 687 56.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 6.6e-218 761.1 699 57.7
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.1e-217 760.4 686 56.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 9.5e-217 757.3 691 56.7
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.1e-215 753.8 681 58.1
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.4e-215 753.4 697 56.1
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 2.4e-215 752.7 686 57.6
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.9e-212 743.0 693 56.3
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 2.1e-211 739.6 843 49.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 7.8e-211 737.6 685 56.1
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 6.6e-210 734.6 694 53.5
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 8.7e-210 734.2 644 58.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 4.4e-206 721.8 686 55.8
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.3e-202 709.5 685 54.5
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.3e-200 703.7 713 52.3
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.6e-200 703.4 734 51.2
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 9.0e-199 697.6 694 53.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.0e-198 696.4 701 51.6
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 4.5e-198 695.3 696 54.7
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.3e-197 693.7 677 55.2
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.8e-197 692.2 687 53.1
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 4.9e-197 691.8 685 53.0
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 8.4e-197 691.0 710 52.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 4.2e-196 688.7 717 52.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 9.3e-196 687.6 675 55.1
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.2e-195 687.2 693 54.5
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 3.0e-194 682.6 691 52.1
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 3.9e-194 682.2 706 53.1
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 6.7e-194 681.4 690 52.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 8.7e-194 681.0 704 53.0
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.5e-193 680.2 676 52.7
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 9.6e-193 677.6 708 52.7
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.8e-191 673.3 698 50.7
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 6.9e-191 671.4 701 52.5
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 4.5e-190 668.7 699 51.4
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.2e-189 666.4 709 50.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.9e-188 663.3 674 52.2
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 8.7e-186 654.4 690 51.3
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.9e-185 653.3 701 49.9
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 8.2e-184 647.9 705 49.2
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.1e-183 647.5 692 50.1
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.1e-183 647.5 719 48.7
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.1e-183 647.5 692 49.7
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 3.1e-183 646.0 692 50.7
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.0e-183 645.6 700 50.0
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 4.0e-183 645.6 704 50.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.0e-183 645.6 707 49.8
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.5e-182 643.7 700 49.7
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.5e-180 636.3 764 46.5
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.5e-180 636.3 671 51.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 9.3e-180 634.4 599 55.4
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 6.0e-179 631.7 735 47.8
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.1e-171 606.7 689 48.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.0e-170 604.4 634 51.7
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.3e-169 599.4 652 49.5
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 5.7e-169 598.6 692 48.1
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 5.1e-162 575.5 653 48.9
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 2.4e-159 566.6 698 45.3
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 4.1e-159 565.8 711 45.3
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.1e-155 553.5 412 67.7
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.0e-154 549.7 754 43.4
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.0e-153 547.0 545 52.7
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 3.6e-147 526.2 544 53.5
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.2e-144 515.0 378 69.8
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.5e-140 504.2 597 47.1
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.5e-140 504.2 475 56.0
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 7.2e-140 501.9 681 44.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 5.7e-137 492.3 588 47.8
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.1e-127 459.9 682 40.0
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 3.2e-119 433.3 436 52.5
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.1e-111 406.4 267 78.3
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 5.4e-111 406.0 330 62.7
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.7e-104 383.3 557 39.5
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.4e-103 379.4 206 93.7
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.2e-99 368.2 581 36.3
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.8e-88 330.1 319 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.4e-88 329.3 535 36.4
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 1.7e-85 321.2 256 59.8
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 2.8e-75 287.3 274 57.7
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.2e-71 273.9 341 40.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.1e-66 258.8 294 48.0
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.3e-53 214.5 500 33.6
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 8.2e-51 206.1 236 44.9
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.1e-50 205.7 157 65.0
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.9e-49 199.9 320 34.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.7e-46 191.0 235 46.4
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.0e-45 189.1 216 46.3
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.2e-43 181.4 250 39.6
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.0e-42 176.4 87 98.9
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 2.0e-41 174.9 166 54.8
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.2e-40 171.4 87 96.6
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.5e-40 169.5 87 95.4
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.1e-38 163.3 308 33.4
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 5.7e-36 156.8 131 64.1
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.3e-35 153.3 87 89.7
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-32 145.2 300 30.7
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-32 144.8 369 28.2
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-31 141.7 304 31.2
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 4.2e-31 140.6 167 46.7
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 9.4e-31 139.4 130 53.8
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 6.1e-30 136.7 88 71.6
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.0e-29 134.4 304 33.2
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.8e-29 133.3 87 80.5
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-28 131.7 186 39.8
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 4.8e-27 127.1 149 50.3
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-26 124.0 190 33.7
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.8e-24 117.5 304 27.0
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.8e-21 108.6 310 28.4
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 4.0e-21 107.5 104 53.8
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-20 105.9 145 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 9.8e-20 102.8 373 26.3
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.3e-19 99.8 345 25.8
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-18 98.2 212 32.1
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.1e-18 96.3 129 48.1
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-16 92.4 134 37.3
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.0e-16 90.5 136 42.6
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.5e-15 88.2 314 28.0
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 3.3e-15 87.8 91 51.6
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.5e-15 87.0 45 93.3
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.5e-15 87.0 145 33.8
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-14 85.9 60 68.3
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 8.0e-14 83.2 63 61.9
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-14 83.2 159 36.5
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-13 81.6 43 90.7
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 4.0e-13 80.9 118 34.7
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 5.2e-13 80.5 57 66.7
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 5.2e-13 80.5 61 60.7
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-12 79.0 76 55.3
CSS0007257 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 1.3e-11 75.9 44 86.4
CSS0018695 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 3.7e-11 74.3 44 86.4
CSS0003823 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 6.3e-11 73.6 43 90.7
CSS0005932 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 1.1e-10 72.8 44 86.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.1e-10 72.8 56 58.9
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.4e-10 72.4 57 63.2
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.4e-10 70.5 71 45.1
CSS0002301 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 1.6e-09 68.9 45 80.0
CSS0038998 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 1.3e-08 65.9 45 77.8
CSS0043058 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 1.3e-08 65.9 56 66.1
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-08 64.7 166 27.1
CSS0016116 Camellia sinensis var. sinensis HOM05D024634 ORTHO05D005220 6.6e-08 63.5 45 75.6
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 2.5e-07 61.6 46 54.3
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-07 60.5 66 43.9
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-06 59.3 46 60.9
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 8.0e-06 56.6 47 55.3


User provided reference genes

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