Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010490 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.2e-34 148.3 69 100.0
CSS0008037 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 3.5e-32 141.0 68 94.1
CSS0035901 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 3.5e-32 141.0 68 92.6
CSS0038597 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 3.5e-32 141.0 68 94.1
CSS0035075 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 7.8e-32 139.8 68 92.6
CSS0045099 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.3e-31 138.3 68 91.2
CSS0013413 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.3e-28 128.3 69 82.6
CSS0020531 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 5.4e-25 117.1 68 77.9
CSS0007628 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 6.0e-24 113.6 68 73.5
CSS0034635 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D003213 1.0e-23 112.8 68 70.6
CSS0024795 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.5e-22 109.0 66 69.7
CSS0041464 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.5e-22 109.0 66 69.7
Rhsim01G0119700 Rhododendron simsii HOM05D000107 ORTHO05D003213 4.7e-21 104.0 68 67.6
CSS0002050 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.4e-20 102.4 63 71.4
Rhsim07G0185300 Rhododendron simsii HOM05D000107 ORTHO05D003213 9.3e-17 89.7 68 60.3
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-16 89.4 68 61.8
Rhsim09G0057000 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.7e-16 88.2 68 60.3
Rhsim07G0158800 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.0e-16 87.0 68 57.4
RhsimUnG0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.0e-16 87.0 68 57.4
Rhsim10G0071800 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.8e-16 86.7 68 57.4
RhsimUnG0074200 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-15 85.9 68 55.9
CSS0003322 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-15 85.5 68 55.9
CSS0012803 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-15 85.5 68 55.9
CSS0024740 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-15 85.5 68 55.9
CSS0032482 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-15 85.5 68 55.9
CSS0047068 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-15 85.5 68 55.9
CSS0048301 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-15 85.5 68 55.9
Rhsim01G0128800 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-14 81.3 68 51.5
Rhsim10G0071900 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-14 80.5 68 54.4
RhsimUnG0068500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-13 79.3 68 52.9
CSS0014387 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.6e-13 79.0 68 52.9
CSS0022362 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.1e-13 78.6 68 47.1
Rhsim01G0076100 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.8e-12 75.5 63 57.1
CANSAT80G1283 Cannabis sativa HOM05D013174 ORTHO05D015289 1.1e-09 66.2 68 44.1
Migut.K00946 Erythranthe guttata HOM05D000107 ORTHO05D003213 1.1e-09 66.2 65 41.5
Rhsim06G0126900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-09 66.2 68 45.6
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-09 66.2 68 45.6
Migut.O00078 Erythranthe guttata HOM05D000107 ORTHO05D000062 4.2e-09 64.3 65 41.5
EL10Ac1g02206 Beta vulgaris HOM05D000107 ORTHO05D000062 5.4e-09 63.9 65 43.1
EL10Ac9g22369 Beta vulgaris HOM05D000107 ORTHO05D000062 5.4e-09 63.9 65 43.1
Rhsim10G0126500 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.3e-09 63.2 68 44.1
Aqoxy2G02171 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.2e-08 62.8 67 47.8
Aqoxy6G01994 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.6e-08 62.4 67 47.8
QL01p005110 Quercus lobata HOM05D000107 ORTHO05D000062 1.6e-08 62.4 72 44.4
CANSAT25G1518 Cannabis sativa HOM05D000107 ORTHO05D000062 2.1e-08 62.0 64 42.2
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-08 62.0 66 42.4
Rhsim05G0124400 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.5e-08 61.2 68 47.1
Rhsim11G0023200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.5e-08 61.2 68 47.1
Rhsim11G0024300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.5e-08 61.2 68 45.6
Rhsim01G0178900 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.6e-08 60.8 66 42.4
Hma1.2p1_1229F.1_g268720 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 7.9e-08 60.1 72 43.1
CANSAT64G1673 Cannabis sativa HOM05D000107 ORTHO05D000062 1.0e-07 59.7 64 45.3
CANSAT64G2733 Cannabis sativa HOM05D000107 ORTHO05D000062 1.0e-07 59.7 64 45.3
Oeu027214.1 Olea europaea HOM05D000107 ORTHO05D003213 1.0e-07 59.7 68 42.6
CANSAT11G2258 Cannabis sativa HOM05D000107 ORTHO05D000062 1.3e-07 59.3 64 46.9
CANSAT78G0770 Cannabis sativa HOM05D000107 ORTHO05D000062 1.3e-07 59.3 64 40.6
RhsimUnG0018000 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-07 59.3 71 42.3
Hund24116 Selenicereus undatus HOM05D006468 ORTHO05D006908 1.3e-07 59.3 67 37.3
PSO729G0206 Papaver somniferum HOM05D000107 ORTHO05D000062 1.8e-07 58.9 66 43.9
Nitab4.5_0000757g0030 Nicotiana tabacum HOM05D003120 ORTHO05D010952 2.3e-07 58.5 68 38.2
Rhsim12G0007200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-07 58.5 68 41.2
Ah.10g024720 Amaranthus hybridus HOM05D000107 ORTHO05D000062 3.0e-07 58.2 70 44.3
COL.COLO4_24166 Corchorus olitorius HOM05D000107 ORTHO05D003213 3.0e-07 58.2 67 38.8
Hund01184 Selenicereus undatus HOM05D000107 ORTHO05D006908 3.0e-07 58.2 64 39.1
CANSAT64G1192 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 57.4 65 46.2
ECA236G3668 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.1e-07 57.4 64 40.6
FvH4_1g29805 Fragaria vesca HOM05D000107 ORTHO05D000062 5.1e-07 57.4 68 41.2
Rhsim02G0220700 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.1e-07 57.4 64 46.9
Rhsim06G0085100 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.1e-07 57.4 64 46.9
Rhsim08G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.1e-07 57.4 64 46.9
Solyc11g044933.1 Solanum lycopersicum HOM05D000107 ORTHO05D000062 5.1e-07 57.4 61 44.3
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 6.7e-07 57.0 68 41.2
Atru.chr13.1787 Acer truncatum HOM05D000107 ORTHO05D003213 8.7e-07 56.6 68 42.6
Atru.chr13.1791 Acer truncatum HOM05D000107 ORTHO05D003213 8.7e-07 56.6 68 42.6
CANSAT01G1055 Cannabis sativa HOM05D000107 ORTHO05D000062 8.7e-07 56.6 64 39.1
AUR62024081 Chenopodium quinoa HOM05D003888 ORTHO05D003213 8.7e-07 56.6 63 39.7
Psat3g162080 Pisum sativum HOM05D000107 ORTHO05D003213 8.7e-07 56.6 68 36.8
Prupe.1G266000 Prunus persica HOM05D000107 ORTHO05D000062 8.7e-07 56.6 67 41.8
CANSAT54G1543 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 56.2 64 39.1
CANSAT56G0128 Cannabis sativa HOM05D024511 ORTHO05D003213 1.1e-06 56.2 68 35.3
CANSAT56G3353 Cannabis sativa HOM05D024511 ORTHO05D003213 1.1e-06 56.2 68 35.3
CANSAT71G0016 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 56.2 64 39.1
CANSAT78G1492 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 56.2 64 48.4
TWI31G1320 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.1e-06 56.2 65 40.0
VMungo0540G0166 Vigna mungo HOM05D044776 ORTHO05D003213 1.1e-06 56.2 67 43.3
VMungo1309G1266 Vigna mungo HOM05D000107 ORTHO05D003213 1.1e-06 56.2 67 43.3
CsaV3_3G021750 Cucumis sativus L. HOM05D000107 ORTHO05D003213 1.5e-06 55.8 68 41.2
CsaV3_7G011410 Cucumis sativus L. HOM05D000107 ORTHO05D003213 1.5e-06 55.8 68 42.6
Hma1.2p1_0613F.1_g189140 Hydrangea macrophylla HOM05D007798 ORTHO05D009882 1.5e-06 55.8 72 41.7
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.5e-06 55.8 64 45.3
RcHm_v2.0_Chr4g0414991 Rosa chinensis HOM05D000107 ORTHO05D003213 1.5e-06 55.8 67 44.8
Aqoxy2G01646 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.9e-06 55.5 66 43.9
AUR62024141 Chenopodium quinoa HOM05D007123 ORTHO05D003213 1.9e-06 55.5 47 51.1
ECA232G2916 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-06 55.5 64 45.3
Gorai.010G175300 Gossypium raimondii HOM05D000107 ORTHO05D000062 1.9e-06 55.5 64 40.6
Hma1.2p1_1033F.1_g250230 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 1.9e-06 55.5 68 42.6
Oeu062448.1 Olea europaea HOM05D000107 ORTHO05D003213 1.9e-06 55.5 66 42.4
Rhsim01G0140400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-06 55.5 39 59.0
Rhsim01G0164300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-06 55.5 64 45.3
Rhsim04G0033300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-06 55.5 64 45.3
SHI03580 Sapria himalayana HOM05D000616 ORTHO05D000233 1.9e-06 55.5 68 38.2
Atru.chr3.1417 Acer truncatum HOM05D000107 ORTHO05D000062 2.5e-06 55.1 67 38.8
CANSAT78G2036 Cannabis sativa HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 48.4
AUR62040068 Chenopodium quinoa HOM05D000107 ORTHO05D000062 2.5e-06 55.1 63 39.7
ECA246G2093 Erigeron canadensis HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 45.3
Nitab4.5_0005820g0060 Nicotiana tabacum HOM05D003120 ORTHO05D010952 2.5e-06 55.1 68 36.8
Oeu004802.1 Olea europaea HOM05D000107 ORTHO05D003213 2.5e-06 55.1 68 41.2
RhsimUnG0041600 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-06 55.1 72 40.3
TAR230G0001 Trochodendron aralioides HOM05D000107 ORTHO05D003213 2.5e-06 55.1 65 41.5
TAR344G0003 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.5e-06 55.1 65 41.5
VMungo0251G1001 Vigna mungo HOM05D000028 ORTHO05D001343 2.5e-06 55.1 67 40.3
AUR62022287 Chenopodium quinoa HOM05D000107 ORTHO05D003213 3.3e-06 54.7 58 41.4
FvH4_3g31743 Fragaria vesca HOM05D000107 ORTHO05D000062 3.3e-06 54.7 60 43.3
FvH4_4g09213 Fragaria vesca HOM05D000107 ORTHO05D000062 3.3e-06 54.7 65 40.0
PSO832G0049 Papaver somniferum HOM05D000107 ORTHO05D000062 3.3e-06 54.7 71 42.3
Rhsim08G0058900 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-06 54.7 39 56.4
Rhsim09G0073600 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-06 54.7 71 38.0
AUR62038589 Chenopodium quinoa HOM05D000107 ORTHO05D000233 4.3e-06 54.3 65 41.5
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
Lj1g0007648 Lotus japonicus HOM05D000107 ORTHO05D003213 4.3e-06 54.3 65 50.8
PSO801G0365 Papaver somniferum HOM05D000107 ORTHO05D000062 4.3e-06 54.3 69 40.6
VMungo0331G0246 Vigna mungo HOM05D000107 ORTHO05D003213 4.3e-06 54.3 67 41.8
Atru.chr10.32 Acer truncatum HOM05D000107 ORTHO05D000062 5.6e-06 53.9 69 39.1
Atru.chr3.2737 Acer truncatum HOM05D000107 ORTHO05D000062 5.6e-06 53.9 69 39.1
Aqoxy3G01844 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 42.6
CsaV3_1G024200 Cucumis sativus L. HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 41.2
CsaV3_1G029970 Cucumis sativus L. HOM05D000107 ORTHO05D003213 5.6e-06 53.9 68 41.2
CsaV3_1G031320 Cucumis sativus L. HOM05D000107 ORTHO05D003213 5.6e-06 53.9 68 41.2
CsaV3_5G015090 Cucumis sativus L. HOM05D000107 ORTHO05D003213 5.6e-06 53.9 68 41.2
CsaV3_6G019030 Cucumis sativus L. HOM05D000107 ORTHO05D003213 5.6e-06 53.9 68 41.2
CsaV3_6G032210 Cucumis sativus L. HOM05D000107 ORTHO05D003213 5.6e-06 53.9 68 41.2
ECA232G4762 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 67 38.8
HanXRQChr14g0441971 Helianthus annuus HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 44.1
Hma1.2p1_0119F.1_g056730 Hydrangea macrophylla HOM05D000107 ORTHO05D000062 5.6e-06 53.9 72 36.1
Lj8C456G3 Lonicera japonica HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 35.9
Nitab4.5_0006332g0050 Nicotiana tabacum HOM05D003120 ORTHO05D003568 5.6e-06 53.9 68 39.7
Oeu017731.1 Olea europaea HOM05D000107 ORTHO05D003213 5.6e-06 53.9 66 40.9
Oeu017732.1 Olea europaea HOM05D000107 ORTHO05D003213 5.6e-06 53.9 66 40.9
Os08g0215200 Oryza sativa ssp. japonica HOM05D000107 ORTHO05D003213 5.6e-06 53.9 64 39.1
Rhsim05G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 43.8
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 43.8
Rhsim09G0134500 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 43.8
Atru.chr2.1683 Acer truncatum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 66 39.4
Atru.chr4.455 Acer truncatum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 44.1
CSS0018002 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 41.2
CSS0028705 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 41.2
CSS0031171 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 41.2
CSS0036122 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 41.2
CSS0047073 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 41.2
CANSAT56G1321 Cannabis sativa HOM05D024511 ORTHO05D003213 7.4e-06 53.5 68 33.8
CANSAT56G2086 Cannabis sativa HOM05D024511 ORTHO05D003213 7.4e-06 53.5 68 33.8
CAN.G777.14 Capsicum annuum HOM05D022040 ORTHO05D003213 7.4e-06 53.5 58 41.4
Ciclev10013614m.g Citrus clementina HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 35.3
Ciclev10030123m.g Citrus clementina HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 35.3
PSO017G1197 Papaver somniferum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 71 42.3
PSO210G7460 Papaver somniferum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 71 42.3
PSO832G2363 Papaver somniferum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 71 42.3
Peaxi162Scf00479g00422 Petunia axillaris HOM05D000107 ORTHO05D000062 7.4e-06 53.5 64 42.2
QL07p012857 Quercus lobata HOM05D000107 ORTHO05D000062 7.4e-06 53.5 66 43.9
TWI15G0534 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.4e-06 53.5 65 43.1
Atru.chr4.799 Acer truncatum HOM05D000107 ORTHO05D000062 9.6e-06 53.1 66 39.4
CANSAT25G3813 Cannabis sativa HOM05D054931 ORTHO05D003213 9.6e-06 53.1 68 33.8
CANSAT80G1036 Cannabis sativa HOM05D000107 ORTHO05D000062 9.6e-06 53.1 68 33.8
CAN.G50.3 Capsicum annuum HOM05D003120 ORTHO05D003568 9.6e-06 53.1 68 38.2
Ciclev10003481m.g Citrus clementina HOM05D000107 ORTHO05D003213 9.6e-06 53.1 62 45.2
TPR.G25200 Trifolium pratense HOM05D000107 ORTHO05D003213 9.6e-06 53.1 69 42.0
TWI32G1228 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 9.6e-06 53.1 64 40.6
TAR049G0006 Trochodendron aralioides HOM05D000107 ORTHO05D000062 9.6e-06 53.1 64 43.8


User provided reference genes

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