Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 7.4e-167 590.5 304 100.0
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.8e-150 535.4 282 98.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.3e-143 511.9 282 93.6
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.4e-133 479.9 282 86.2
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 3.5e-132 475.3 282 86.5
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 7.7e-132 474.2 283 84.8
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.0e-131 473.8 287 85.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.3e-131 473.4 282 85.8
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 9.4e-130 467.2 282 84.0
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 5.7e-127 458.0 282 79.8
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 9.7e-127 457.2 282 81.9
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.8e-125 453.0 282 80.9
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-124 449.1 283 79.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-124 449.1 283 79.9
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 4.5e-124 448.4 282 77.0
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 2.9e-123 445.7 282 76.6
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 5.0e-123 444.9 282 79.1
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 6.5e-123 444.5 282 80.1
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 8.5e-123 444.1 282 79.8
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.5e-122 443.4 283 79.5
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 3.2e-122 442.2 282 78.4
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.2e-122 441.8 282 79.4
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 5.5e-122 441.4 282 80.5
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.6e-121 439.9 282 79.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.6e-121 439.9 282 78.7
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 3.6e-121 438.7 283 77.4
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 6.1e-121 438.0 282 79.1
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 6.1e-121 438.0 282 77.0
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 8.0e-121 437.6 282 77.0
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 8.0e-121 437.6 282 76.6
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 8.0e-121 437.6 282 76.6
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 1.0e-120 437.2 282 77.0
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.8e-120 436.4 282 78.0
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.3e-120 436.0 300 72.7
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.3e-120 436.0 300 72.7
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 6.8e-120 434.5 280 77.1
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 6.8e-120 434.5 282 79.1
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 6.8e-120 434.5 282 76.6
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.5e-119 433.3 290 75.9
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.0e-119 433.0 282 77.0
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 2.6e-119 432.6 282 78.4
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 2.6e-119 432.6 282 77.7
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.6e-119 432.6 282 77.0
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 5.7e-119 431.4 282 76.2
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.5e-119 431.0 282 75.9
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 7.5e-119 431.0 282 75.9
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 7.5e-119 431.0 282 75.9
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 9.7e-119 430.6 283 77.0
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-118 429.5 282 75.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 3.7e-118 428.7 282 75.9
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.8e-118 428.3 282 75.9
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 6.3e-118 427.9 290 75.2
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 8.3e-118 427.6 282 77.3
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 8.3e-118 427.6 282 77.7
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-117 426.4 282 75.9
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.8e-117 426.4 282 76.6
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.8e-117 426.4 300 71.3
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.8e-117 426.4 282 75.5
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.1e-117 425.2 281 74.7
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 5.3e-117 424.9 282 75.2
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.0e-117 424.5 282 74.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 9.1e-117 424.1 283 78.1
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 9.1e-117 424.1 326 68.7
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.2e-116 423.7 282 73.8
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.6e-116 423.3 285 74.4
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.0e-116 422.9 282 75.2
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 2.0e-116 422.9 282 77.3
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.5e-116 422.2 282 74.1
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 4.5e-116 421.8 282 75.5
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 4.5e-116 421.8 282 74.5
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 2.2e-115 419.5 282 73.4
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 2.2e-115 419.5 282 75.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.5e-114 416.8 282 73.4
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 2.5e-114 416.0 283 72.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 2.5e-114 416.0 283 75.3
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 2.1e-113 412.9 282 72.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 4.7e-113 411.8 277 75.8
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 4.7e-113 411.8 282 72.7
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.0e-112 410.6 282 74.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.0e-112 410.6 281 73.7
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.0e-112 409.1 282 74.1
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-112 408.7 283 72.1
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 5.2e-112 408.3 277 73.6
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 8.8e-112 407.5 285 71.9
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-111 406.4 283 72.1
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 2.2e-110 402.9 283 72.8
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 2.2e-110 402.9 282 72.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 2.8e-110 402.5 282 71.3
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 3.7e-110 402.1 282 71.3
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.8e-110 401.7 281 72.6
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 6.3e-110 401.4 282 70.6
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.8e-109 399.8 283 72.4
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.8e-109 399.8 282 71.6
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 2.4e-109 399.4 282 70.9
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 2.4e-109 399.4 282 70.9
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 2.4e-109 399.4 282 70.9
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 2.4e-109 399.4 282 70.2
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.4e-109 399.4 282 70.9
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 3.1e-109 399.1 246 80.9
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 3.1e-109 399.1 282 72.3
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 4.1e-109 398.7 282 69.9
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 5.4e-109 398.3 282 70.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 3.5e-108 395.6 282 70.6
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.3e-107 393.7 270 72.2
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 6.6e-107 391.3 280 71.8
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.9e-104 380.9 235 80.9
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 1.3e-102 377.1 282 67.4
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.8e-101 373.2 282 68.1
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.3e-99 366.3 282 69.5
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.3e-98 362.5 204 86.3
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.3e-96 356.3 306 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.8e-95 351.7 282 61.0
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.7e-92 342.8 223 77.1
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 2.5e-90 336.3 223 75.8
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.1e-89 333.2 279 62.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.8e-88 330.1 283 58.7
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 3.4e-87 325.9 223 74.4
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.6e-84 317.0 283 57.2
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 3.5e-84 315.8 283 58.0
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.0e-84 315.1 283 56.5
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 3.9e-83 312.4 282 58.9
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.1e-82 310.8 202 73.8
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 4.7e-81 305.4 250 60.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 6.8e-80 301.6 220 66.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.5e-79 300.4 284 55.6
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.5e-76 289.3 259 62.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-72 275.0 231 63.2
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 4.2e-69 265.8 256 53.1
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 6.0e-68 261.9 176 77.8
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-65 253.1 223 59.6
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 9.9e-63 244.6 150 82.0
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-56 223.8 149 72.5
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.1e-56 223.0 214 58.4
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.4e-54 215.3 150 70.7
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 2.5e-50 203.4 143 65.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.3e-50 203.0 135 74.1
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.9e-42 177.2 182 54.9
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 2.5e-42 176.8 253 38.7
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 3.1e-40 169.9 142 62.0
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 7.9e-36 155.2 288 35.4
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.3e-35 153.7 106 72.6
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.0e-30 138.3 99 63.6
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.7e-30 137.5 107 69.2
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-29 134.4 132 57.6
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 7.4e-26 122.1 250 29.6
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 5.0e-22 109.4 81 67.9
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-21 107.5 116 54.3
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 4.7e-20 102.8 128 48.4
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-16 90.9 110 48.2
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 5.3e-16 89.4 52 86.5
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 4.5e-15 86.3 110 46.4
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 2.1e-12 77.4 91 49.5
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.2e-07 61.6 105 38.1
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.2e-07 61.6 45 64.4
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-07 60.8 52 57.7
CSS0041550 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D113305 7.7e-07 58.9 35 91.4
CSS0023282 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.0e-06 58.5 49 73.5
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 52 53.8
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 52 53.8


User provided reference genes

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