Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010467 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D009445 2.9e-79 298.5 150 100.0
CSS0021915 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D009445 8.4e-55 217.2 145 67.6
Rhsim04G0052900 Rhododendron simsii HOM05D000403 ORTHO05D009445 3.9e-52 208.4 145 65.5
Actinidia04541 Actinidia chinensis HOM05D000403 ORTHO05D009445 8.1e-50 200.7 138 67.4
TAR629G3467 Trochodendron aralioides HOM05D000403 ORTHO05D009445 8.1e-50 200.7 143 62.2
Dinv39715 Davidia involucrata HOM05D000403 ORTHO05D009445 1.1e-49 200.3 143 62.2
vmacro09335 Vaccinium macrocarpon HOM05D000403 ORTHO05D009445 1.4e-49 199.9 145 65.5
Lj8A126G68 Lonicera japonica HOM05D000403 ORTHO05D009445 5.2e-49 198.0 145 63.4
TAR629G3358 Trochodendron aralioides HOM05D000403 ORTHO05D009445 2.6e-48 195.7 143 60.1
Gohir.D12G176500 Gossypium hirsutum HOM05D000403 ORTHO05D009445 7.6e-48 194.1 144 63.2
TAR629G0319 Trochodendron aralioides HOM05D000403 ORTHO05D009445 9.9e-48 193.7 143 60.1
Actinidia08390 Actinidia chinensis HOM05D000403 ORTHO05D009445 1.3e-47 193.4 145 62.8
Duzib248G0066 Durio zibethinus HOM05D000403 ORTHO05D009445 3.8e-47 191.8 144 61.8
Duzib248G0215 Durio zibethinus HOM05D000403 ORTHO05D009445 3.8e-47 191.8 144 61.8
CiPaw.04G115300 Carya illinoinensis HOM05D000403 ORTHO05D009445 1.1e-46 190.3 144 61.8
Gorai.008G188900 Gossypium raimondii HOM05D000403 ORTHO05D009445 1.1e-46 190.3 144 61.8
Thecc.02G365200 Theobroma cacao HOM05D000403 ORTHO05D009445 1.1e-46 190.3 144 62.5
FAN09G4385 Fragaria x ananassa HOM05D000403 ORTHO05D009445 2.4e-46 189.1 143 60.1
Gohir.A12G173933 Gossypium hirsutum HOM05D000403 ORTHO05D009445 2.4e-46 189.1 144 61.8
RcHm_v2.0_Chr2g0159131 Rosa chinensis HOM05D000403 ORTHO05D009445 3.2e-46 188.7 145 59.3
GSVIVG01030431001 Vitis vinifera HOM05D000403 ORTHO05D009445 4.2e-46 188.3 143 61.5
Duzib248G1425 Durio zibethinus HOM05D000403 ORTHO05D009445 5.4e-46 188.0 144 60.4
FAN02G3267 Fragaria x ananassa HOM05D000403 ORTHO05D009445 9.3e-46 187.2 142 58.5
Hma1.2p1_0249F.1_g102283 Hydrangea macrophylla HOM05D000403 ORTHO05D009445 9.3e-46 187.2 145 60.7
Ciclev10017567m.g Citrus clementina HOM05D000403 ORTHO05D009445 1.2e-45 186.8 146 59.6
FAN14G5235 Fragaria x ananassa HOM05D000403 ORTHO05D009445 2.7e-45 185.7 143 58.7
VMungo1080G1541 Vigna mungo HOM05D000403 ORTHO05D009445 2.7e-45 185.7 144 60.4
FAN05G5690 Fragaria x ananassa HOM05D000403 ORTHO05D009445 4.6e-45 184.9 137 59.9
VMungo1080G0463 Vigna mungo HOM05D000403 ORTHO05D009445 1.0e-44 183.7 145 59.3
Cfa014391 Carpinus fangiana HOM05D000403 ORTHO05D009445 1.7e-44 183.0 145 58.6
FAN14G2511 Fragaria x ananassa HOM05D000403 ORTHO05D009445 3.0e-44 182.2 146 58.2
Aqoxy1G02110 Aquilegia oxysepala HOM05D000403 ORTHO05D009445 5.1e-44 181.4 143 54.5
Lsat_1_v5_gn_0_44741 Lactuca sativa HOM05D000403 ORTHO05D009445 5.1e-44 181.4 146 60.3
Lsat_1_v5_gn_9_106281 Lactuca sativa HOM05D000403 ORTHO05D009445 5.1e-44 181.4 146 60.3
Cpa.g.sc87.84 Carica papaya HOM05D000403 ORTHO05D009445 1.1e-43 180.3 146 57.5
MD09G1109600 Malus domestica HOM05D000403 ORTHO05D009445 1.5e-43 179.9 143 58.0
PGR142G3846 Punica granatum HOM05D000403 ORTHO05D009445 1.9e-43 179.5 145 57.9
Glyma.12G193500 Glycine max HOM05D000403 ORTHO05D009445 1.3e-42 176.8 145 55.2
Lj3g0009464 Lotus japonicus HOM05D000403 ORTHO05D009445 1.3e-42 176.8 144 56.9
ECA240G3051 Erigeron canadensis HOM05D000403 ORTHO05D009445 4.8e-42 174.9 146 56.8
RcHm_v2.0_Chr2g0159121 Rosa chinensis HOM05D000403 ORTHO05D009445 8.1e-42 174.1 143 55.9
Prupe.3G216700 Prunus persica HOM05D000403 ORTHO05D009445 1.1e-41 173.7 146 56.2
Eucgr.D01327 Eucalyptus grandis HOM05D000403 ORTHO05D009445 5.3e-41 171.4 142 53.5
Medtr2g088220 Medicago truncatula HOM05D000403 ORTHO05D009445 5.3e-41 171.4 144 56.9
Hund14374 Selenicereus undatus HOM05D000403 ORTHO05D009445 6.9e-41 171.0 146 54.1
Haze_12857 Corylus avellana HOM05D000403 ORTHO05D009445 1.2e-40 170.2 148 54.1
Glyma.12G193400 Glycine max HOM05D000403 ORTHO05D009445 2.6e-40 169.1 146 56.8
Glyma.13G309100 Glycine max HOM05D000403 ORTHO05D009445 2.6e-40 169.1 146 56.2
Cpa.g.sc87.82 Carica papaya HOM05D000403 ORTHO05D009445 3.4e-40 168.7 146 54.8
Manes.12G074200 Manihot esculenta HOM05D000403 ORTHO05D009445 4.5e-40 168.3 143 53.8
Eucgr.K00793 Eucalyptus grandis HOM05D000403 ORTHO05D009445 1.3e-39 166.8 146 52.1
QL08p032984 Quercus lobata HOM05D000403 ORTHO05D009445 1.7e-39 166.4 144 54.2
Psat5g263560 Pisum sativum HOM05D000403 ORTHO05D009445 3.8e-39 165.2 144 55.6
AUR62007354 Chenopodium quinoa HOM05D000403 ORTHO05D009445 1.1e-38 163.7 147 53.7
Psat5g263520 Pisum sativum HOM05D000403 ORTHO05D009445 3.2e-38 162.2 144 55.6
Solyc07g045080.3 Solanum lycopersicum HOM05D000403 ORTHO05D009445 3.2e-38 162.2 144 50.7
Nn1g07151 Nelumbo nucifera HOM05D000403 ORTHO05D009445 5.4e-38 161.4 143 48.3
Nitab4.5_0008471g0020 Nicotiana tabacum HOM05D000403 ORTHO05D009445 9.3e-38 160.6 142 50.0
Sopen07g023640 Solanum pennellii HOM05D000403 ORTHO05D009445 9.3e-38 160.6 144 51.4
Ca_01604_v3 Cicer arietinum L. HOM05D000403 ORTHO05D009445 1.2e-37 160.2 144 53.5
GSVIVG01030433001 Vitis vinifera HOM05D000403 ORTHO05D009445 1.6e-37 159.8 148 50.7
Medtr2g088190 Medicago truncatula HOM05D000403 ORTHO05D009445 4.6e-37 158.3 144 52.1
TPR.G4225 Trifolium pratense HOM05D000403 ORTHO05D009445 4.6e-37 158.3 144 52.8
Nitab4.5_0003683g0040 Nicotiana tabacum HOM05D000403 ORTHO05D009445 6.0e-37 157.9 138 52.9
Solyc07g045090.3 Solanum lycopersicum HOM05D000403 ORTHO05D009445 7.9e-37 157.5 144 50.7
Sopen07g023650 Solanum pennellii HOM05D000403 ORTHO05D009445 1.0e-36 157.1 144 50.7
Eucgr.K00795 Eucalyptus grandis HOM05D000403 ORTHO05D009445 1.3e-36 156.8 146 50.0
AUR62018640 Chenopodium quinoa HOM05D000403 ORTHO05D009445 1.8e-36 156.4 152 51.3
PGR142G0967 Punica granatum HOM05D000403 ORTHO05D009445 1.8e-36 156.4 148 48.0
Phvul.005G115400 Phaseolus vulgaris HOM05D000403 ORTHO05D009445 3.0e-36 155.6 144 53.5
Medtr2g088200 Medicago truncatula HOM05D000403 ORTHO05D009445 2.8e-34 149.1 145 51.0
Sc01g0007130 Simmondsia chinensis HOM05D000403 ORTHO05D009445 1.1e-33 147.1 115 58.3
FvH4_6g43110 Fragaria vesca HOM05D000403 ORTHO05D009445 1.5e-32 143.3 142 49.3
Eucgr.D01328 Eucalyptus grandis HOM05D000403 ORTHO05D009445 3.4e-32 142.1 148 45.9
Lj3g0008441 Lotus japonicus HOM05D000403 ORTHO05D009445 9.9e-32 140.6 145 50.3
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 3.5e-29 132.1 145 46.9
FvH4_6g43100 Fragaria vesca HOM05D000403 ORTHO05D009445 1.3e-26 123.6 93 60.2
arahy.Tifrunner.gnm1.ann1.X88PWA Arachis hypogaea HOM05D000403 ORTHO05D009445 1.8e-25 119.8 147 48.3
arahy.Tifrunner.gnm1.ann1.UT8XDE Arachis hypogaea HOM05D000403 ORTHO05D009445 6.9e-25 117.9 147 47.6
AUR62018639 Chenopodium quinoa HOM05D000403 ORTHO05D009445 1.3e-20 103.6 63 73.0
FAN05G3682 Fragaria x ananassa HOM05D000403 ORTHO05D009445 3.0e-20 102.4 86 52.3
Nitab4.5_0008964g0010 Nicotiana tabacum HOM05D000403 ORTHO05D009445 6.7e-20 101.3 134 38.1
Ah.07g200920 Amaranthus hybridus HOM05D009930 ORTHO05D012156 8.2e-18 94.4 73 65.8
PGSC0003DMG400017418 Solanum tuberosum HOM05D000403 ORTHO05D009445 3.1e-17 92.4 74 58.1
SEGI_09855 Sequoiadendron giganteum HOM05D000403 ORTHO05D000350 5.3e-17 91.7 143 36.4
SEGI_29130 Sequoiadendron giganteum HOM05D000403 ORTHO05D009445 1.5e-16 90.1 136 36.8
SEGI_35361 Sequoiadendron giganteum HOM05D000403 ORTHO05D009445 1.7e-15 86.7 144 35.4
SEGI_29619 Sequoiadendron giganteum HOM05D000403 ORTHO05D009445 2.5e-14 82.8 144 36.8
SEGI_02300 Sequoiadendron giganteum HOM05D000403 ORTHO05D009445 5.5e-14 81.6 143 35.0
FAN05G5306 Fragaria x ananassa HOM05D000403 ORTHO05D009445 1.2e-13 80.5 67 50.7
SEGI_19252 Sequoiadendron giganteum HOM05D000403 ORTHO05D000350 1.2e-13 80.5 121 38.0
Cfa022713 Carpinus fangiana HOM05D000403 ORTHO05D009445 8.8e-12 74.3 56 66.1
AagrBONN_evm.TU.Sc2ySwM_228.2615 Anthoceros agrestis HOM05D000403 ORTHO05D000350 6.3e-10 68.2 149 35.6
Ca_04080_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 1.4e-09 67.0 138 29.7
Oeu018468.1 Olea europaea HOM05D000403 ORTHO05D000350 1.4e-09 67.0 127 31.5
Psat3g206480 Pisum sativum HOM05D000403 ORTHO05D000350 1.4e-09 67.0 139 32.4
Solyc12g010960.2 Solanum lycopersicum HOM05D000403 ORTHO05D000350 6.9e-09 64.7 141 30.5
COL.COLO4_36875 Corchorus olitorius HOM05D000403 ORTHO05D000350 9.1e-09 64.3 138 29.7
Migut.N03046 Erythranthe guttata HOM05D000403 ORTHO05D000350 9.1e-09 64.3 138 34.1
RcHm_v2.0_Chr2g0084721 Rosa chinensis HOM05D000403 ORTHO05D000350 9.1e-09 64.3 141 29.8
Ca_21790_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 2.0e-08 63.2 142 29.6
Lsat_1_v5_gn_7_45340 Lactuca sativa HOM05D000403 ORTHO05D000350 2.0e-08 63.2 124 29.0
SGA_v2.0_scaffold12G06205 Striga asiatica HOM05D000403 ORTHO05D000350 2.0e-08 63.2 129 33.3
Migut.N03045 Erythranthe guttata HOM05D000403 ORTHO05D000350 3.4e-08 62.4 138 34.8
Lsat_1_v5_gn_7_45300 Lactuca sativa HOM05D000403 ORTHO05D000350 4.5e-08 62.0 128 30.5
Dinv22101 Davidia involucrata HOM05D000403 ORTHO05D000350 1.0e-07 60.8 128 32.0
Zm00001eb168380 Zea mays HOM05D000403 ORTHO05D000350 1.0e-07 60.8 142 31.7
AL2G22510 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.3e-07 60.5 143 31.5
Carub.0002s1138 Capsella rubella HOM05D000403 ORTHO05D000350 1.3e-07 60.5 140 32.9
HanXRQChr09g0242231 Helianthus annuus HOM05D000403 ORTHO05D000350 1.3e-07 60.5 128 28.1
HanXRQChr05g0143341 Helianthus annuus HOM05D000403 ORTHO05D000350 2.2e-07 59.7 136 29.4
Psat0s2549g0200 Pisum sativum HOM05D000403 ORTHO05D000350 2.2e-07 59.7 139 26.6
Zm00001eb112460 Zea mays HOM05D000403 ORTHO05D000350 2.2e-07 59.7 142 31.7
CANSAT35G0156 Cannabis sativa HOM05D000403 ORTHO05D000350 2.9e-07 59.3 141 30.5
CANSAT56G2351 Cannabis sativa HOM05D000403 ORTHO05D000350 2.9e-07 59.3 140 32.9
Cpa.g.sc75.38 Carica papaya HOM05D000403 ORTHO05D000350 2.9e-07 59.3 128 32.0
Medtr7g406860 Medicago truncatula HOM05D000403 ORTHO05D000350 2.9e-07 59.3 142 29.6
Medtr8g010000 Medicago truncatula HOM05D000403 ORTHO05D000350 2.9e-07 59.3 139 26.6
arahy.Tifrunner.gnm1.ann1.48E7F5 Arachis hypogaea HOM05D000403 ORTHO05D000350 3.8e-07 58.9 140 32.1
EL10Ac3g06143 Beta vulgaris HOM05D000403 ORTHO05D000350 3.8e-07 58.9 138 29.0
FvH4_1g00346 Fragaria vesca HOM05D000403 ORTHO05D000350 3.8e-07 58.9 138 30.4
SalBow1G1229 Salvia bowleyana HOM05D000403 ORTHO05D000350 3.8e-07 58.9 129 29.5
Solyc12g010950.2 Solanum lycopersicum HOM05D000403 ORTHO05D000350 3.8e-07 58.9 141 31.9
Ah.07g203110 Amaranthus hybridus HOM05D000403 ORTHO05D000350 5.0e-07 58.5 136 27.9
EL10Ac4g10040 Beta vulgaris HOM05D000403 ORTHO05D000350 5.0e-07 58.5 137 32.8
CANSAT56G0095 Cannabis sativa HOM05D000403 ORTHO05D000350 5.0e-07 58.5 140 32.9
Migut.J01160 Erythranthe guttata HOM05D000403 ORTHO05D000350 5.0e-07 58.5 134 28.4
Gohir.D13G018700 Gossypium hirsutum HOM05D000403 ORTHO05D000350 5.0e-07 58.5 140 29.3
Gorai.013G020700 Gossypium raimondii HOM05D000403 ORTHO05D000350 5.0e-07 58.5 140 29.3
PSO170G5910 Papaver somniferum HOM05D000403 ORTHO05D000350 5.0e-07 58.5 131 29.8
Aqoxy7G02239 Aquilegia oxysepala HOM05D000403 ORTHO05D000350 6.5e-07 58.2 144 28.5
Cfa003369 Carpinus fangiana HOM05D000403 ORTHO05D000350 6.5e-07 58.2 127 29.1
FAN28G0401 Fragaria x ananassa HOM05D000403 ORTHO05D000350 6.5e-07 58.2 139 32.4
PGSC0003DMG400007802 Solanum tuberosum HOM05D000403 ORTHO05D000350 6.5e-07 58.2 140 30.0
HPP92_007595 Vanilla planifolia HOM05D000403 ORTHO05D000350 6.5e-07 58.2 98 30.6
Cc06_g19030 Coffea canephora HOM05D000403 ORTHO05D000350 8.5e-07 57.8 137 28.5
Eucgr.C01168 Eucalyptus grandis HOM05D000403 ORTHO05D000350 8.5e-07 57.8 128 30.5
MBI04_g08011_MAGBIO Magnolia biondii HOM05D000403 ORTHO05D000350 8.5e-07 57.8 140 31.4
Solyc09g091700.4 Solanum lycopersicum HOM05D000403 ORTHO05D000350 8.5e-07 57.8 127 26.8
AUR62000258 Chenopodium quinoa HOM05D000403 ORTHO05D000350 1.1e-06 57.4 137 31.4
Ca_23154_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 1.1e-06 57.4 142 29.6
CsaV3_5G025120 Cucumis sativus L. HOM05D000403 ORTHO05D000350 1.1e-06 57.4 138 27.5
Manes.05G119600 Manihot esculenta HOM05D000403 ORTHO05D000350 1.1e-06 57.4 129 32.6
Nitab4.5_0008471g0030 Nicotiana tabacum HOM05D000403 ORTHO05D009445 1.1e-06 57.4 59 40.7
PSO170G3060 Papaver somniferum HOM05D000403 ORTHO05D000350 1.1e-06 57.4 131 29.8
Sopen01g031810 Solanum pennellii HOM05D000403 ORTHO05D000350 1.1e-06 57.4 142 28.9
TPR.G17366 Trifolium pratense HOM05D000403 ORTHO05D000350 1.1e-06 57.4 139 25.2
Gohir.A13G017600 Gossypium hirsutum HOM05D000403 ORTHO05D000350 1.4e-06 57.0 140 29.3
Sabra17G0007500 Salix brachista HOM05D000403 ORTHO05D000350 1.4e-06 57.0 117 30.8
Phvul.010G039200 Phaseolus vulgaris HOM05D000403 ORTHO05D000350 1.9e-06 56.6 141 26.2
Gorai.005G006800 Gossypium raimondii HOM05D000403 ORTHO05D000350 2.5e-06 56.2 142 31.0
Lalb_Chr12g0210201 Lupinus albus HOM05D000403 ORTHO05D000350 2.5e-06 56.2 142 31.0
Prupe.7G268800 Prunus persica HOM05D000403 ORTHO05D000350 2.5e-06 56.2 139 29.5
Aqoxy7G00658 Aquilegia oxysepala HOM05D000403 ORTHO05D000350 3.2e-06 55.8 134 28.4
Duzib151G1048 Durio zibethinus HOM05D000403 ORTHO05D000350 3.2e-06 55.8 99 28.3
ECA240G1070 Erigeron canadensis HOM05D000403 ORTHO05D000350 3.2e-06 55.8 127 26.0
PSO455G0085 Papaver somniferum HOM05D000403 ORTHO05D000350 3.2e-06 55.8 133 29.3
CANSAT35G0578 Cannabis sativa HOM05D000403 ORTHO05D000350 4.2e-06 55.5 141 28.4
ECA240G3868 Erigeron canadensis HOM05D000403 ORTHO05D000350 4.2e-06 55.5 128 26.6
FvH4_1g00343 Fragaria vesca HOM05D000403 ORTHO05D000350 4.2e-06 55.5 139 31.7
PGSC0003DMG400007803 Solanum tuberosum HOM05D000403 ORTHO05D000350 4.2e-06 55.5 139 29.5
CANSAT35G0286 Cannabis sativa HOM05D000403 ORTHO05D000350 5.5e-06 55.1 141 28.4
Lju470A11T83 Lonicera japonica HOM05D000403 ORTHO05D000350 5.5e-06 55.1 141 29.8
RcHm_v2.0_Chr2g0084731 Rosa chinensis HOM05D000403 ORTHO05D000350 5.5e-06 55.1 138 29.0
Sabra07G0116300 Salix brachista HOM05D000403 ORTHO05D000350 5.5e-06 55.1 139 30.9
AagrBONN_evm.TU.Sc2ySwM_368.2164 Anthoceros agrestis HOM05D000403 ORTHO05D000350 7.2e-06 54.7 150 25.3
HanXRQChr03g0062761 Helianthus annuus HOM05D000403 ORTHO05D000350 7.2e-06 54.7 128 28.1
Os12g0225900 Oryza sativa ssp. japonica HOM05D000403 ORTHO05D000350 7.2e-06 54.7 140 29.3
Hund12326 Selenicereus undatus HOM05D000403 ORTHO05D010388 7.2e-06 54.7 118 28.8
Hund12327 Selenicereus undatus HOM05D000403 ORTHO05D000350 7.2e-06 54.7 141 28.4
Atru.chr1.881 Acer truncatum HOM05D000403 ORTHO05D000350 9.4e-06 54.3 145 31.0
CAN.G698.10 Capsicum annuum HOM05D000403 ORTHO05D000350 9.4e-06 54.3 138 28.3
Ciclev10024617m.g Citrus clementina HOM05D000403 ORTHO05D000350 9.4e-06 54.3 136 27.9


User provided reference genes

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