Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.5e-107 391.0 194 100.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-78 297.0 229 71.2
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.1e-78 295.0 229 70.7
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 4.1e-78 295.0 229 69.9
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.0e-78 294.3 229 71.2
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.6e-77 293.1 229 70.7
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.8e-76 288.5 229 69.0
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.0e-76 288.1 229 69.9
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 8.5e-76 287.3 229 69.0
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.5e-75 285.8 230 68.3
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 3.2e-75 285.4 229 67.7
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 4.2e-75 285.0 229 68.1
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 9.4e-75 283.9 229 68.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.6e-74 283.1 229 67.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.6e-74 283.1 229 67.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.6e-74 283.1 228 67.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 2.1e-74 282.7 229 67.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 3.6e-74 282.0 229 65.9
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.7e-74 281.6 229 67.7
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 6.1e-74 281.2 208 72.6
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 8.0e-74 280.8 229 65.9
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.0e-73 280.4 229 66.8
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.0e-73 280.4 229 66.8
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.0e-73 280.4 230 67.8
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.4e-73 280.0 229 65.9
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.8e-73 279.6 229 65.9
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.8e-73 279.6 230 67.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.3e-73 279.3 230 67.8
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.0e-73 278.9 229 65.9
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.0e-73 278.9 230 67.4
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 4.0e-73 278.5 229 67.2
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 5.2e-73 278.1 229 67.2
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 5.2e-73 278.1 229 65.9
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.7e-73 277.7 229 66.4
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 6.7e-73 277.7 228 65.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.5e-72 276.6 230 67.0
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.3e-72 275.4 229 67.2
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 5.7e-72 274.6 229 64.6
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 7.5e-72 274.2 229 64.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.7e-72 273.9 208 72.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.3e-71 273.5 229 65.5
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.7e-71 273.1 226 66.4
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.7e-71 271.9 230 65.7
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.7e-71 271.9 229 63.8
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 6.3e-71 271.2 229 63.8
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 6.3e-71 271.2 229 64.2
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 6.3e-71 271.2 231 65.8
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 8.2e-71 270.8 230 66.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.2e-71 270.8 208 67.3
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.1e-70 270.4 231 66.2
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-70 270.4 229 65.1
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.8e-70 269.6 229 64.6
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.8e-70 269.6 229 64.2
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 3.1e-70 268.9 229 63.8
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 3.1e-70 268.9 231 65.8
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.1e-70 268.5 229 64.6
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.1e-70 268.5 229 64.6
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.3e-70 268.1 208 70.2
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 9.1e-70 267.3 229 63.3
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 9.1e-70 267.3 229 64.2
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 9.1e-70 267.3 208 68.3
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.2e-69 266.9 229 64.6
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.6e-69 266.5 228 63.6
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.6e-69 266.5 219 66.7
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.6e-69 266.5 219 66.2
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 2.0e-69 266.2 229 62.4
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.0e-69 266.2 227 65.2
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.0e-69 266.2 219 65.8
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.7e-69 265.8 228 64.0
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.7e-69 265.8 229 63.8
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.7e-69 265.8 229 64.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.7e-69 265.8 229 64.2
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.7e-69 265.8 229 63.3
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.5e-69 265.4 228 63.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.5e-69 265.4 229 62.9
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 5.9e-69 264.6 229 63.8
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 5.9e-69 264.6 226 64.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 5.9e-69 264.6 229 63.3
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 5.9e-69 264.6 219 66.2
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 7.7e-69 264.2 229 62.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.0e-68 263.8 229 63.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.7e-68 263.1 228 63.2
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 5.0e-68 261.5 223 65.0
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 5.0e-68 261.5 235 63.4
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 6.5e-68 261.2 229 62.0
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.1e-67 260.4 229 62.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.1e-67 260.4 227 61.7
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.1e-67 260.4 208 67.8
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.5e-67 260.0 230 63.9
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.5e-67 260.0 231 62.3
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.5e-67 259.2 224 64.7
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 5.5e-67 258.1 229 62.4
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.5e-67 258.1 231 61.9
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 7.2e-67 257.7 208 63.9
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 9.4e-67 257.3 229 61.6
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 9.4e-67 257.3 231 62.3
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.6e-66 256.5 208 65.4
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.7e-66 255.8 208 66.3
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 4.7e-66 255.0 208 65.9
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.0e-65 253.8 227 63.9
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.8e-65 253.1 217 62.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.3e-65 252.7 230 60.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.3e-65 252.7 208 64.9
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 8.8e-65 250.8 208 66.3
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.5e-64 250.0 208 64.9
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.6e-64 249.2 209 65.1
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 4.4e-64 248.4 267 53.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.3e-63 246.9 208 64.4
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.7e-63 245.4 207 66.2
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 4.8e-63 245.0 221 61.1
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.4e-62 242.7 208 63.0
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.4e-62 242.7 229 59.4
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.7e-61 239.2 201 66.7
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.5e-61 238.8 194 66.0
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.5e-61 238.8 191 66.5
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.7e-60 236.5 190 66.3
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.1e-58 229.6 230 57.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.5e-56 221.1 193 61.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-55 219.9 214 57.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 6.3e-55 218.0 229 56.3
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 3.5e-53 212.2 218 58.7
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 5.2e-49 198.4 222 52.7
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.5e-48 196.8 216 52.3
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.5e-48 196.8 166 66.3
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 2.0e-48 196.4 197 57.9
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 6.4e-47 191.4 218 51.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-45 186.8 136 72.8
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 8.0e-42 174.5 145 62.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.8e-41 171.4 136 66.9
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.4e-40 168.7 132 67.4
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.8e-40 168.3 167 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 7.5e-40 167.9 195 50.3
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.9e-39 165.2 115 73.9
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 6.4e-39 164.9 239 41.4
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.1e-38 164.1 165 57.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 4.1e-38 162.2 155 60.0
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.5e-37 159.1 214 45.3
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 6.0e-29 131.7 123 54.5
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 3.9e-28 129.0 102 63.7
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.8e-23 112.5 71 76.1
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.4e-22 110.5 71 77.5
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.5e-19 100.5 102 57.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.6e-18 97.1 85 63.5
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.8e-18 96.3 114 50.9
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.4e-15 85.1 45 91.1
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.4e-14 83.2 117 47.0
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.1e-13 80.1 57 70.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.7e-12 77.0 78 53.8
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 9.6e-11 71.2 52 61.5


User provided reference genes

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