Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.9e-141 505.8 240 100.0
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.4e-128 463.0 249 89.6
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 3.3e-122 441.8 250 82.0
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 1.1e-120 436.8 250 81.6
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.8e-120 436.0 254 80.7
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 3.1e-120 435.3 258 84.9
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 3.1e-120 435.3 253 81.0
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 3.5e-119 431.8 254 81.1
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.8e-118 428.3 254 77.6
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.8e-118 428.3 254 77.6
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 8.5e-118 427.2 251 78.9
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 2.5e-117 425.6 252 79.4
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 2.5e-117 425.6 251 80.1
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 7.2e-117 424.1 251 78.1
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 7.2e-117 424.1 250 80.0
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 7.2e-117 424.1 254 78.0
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 9.4e-117 423.7 255 78.4
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 9.4e-117 423.7 254 78.3
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 1.2e-116 423.3 253 78.3
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 2.7e-116 422.2 254 77.6
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 2.7e-116 422.2 254 78.0
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 6.1e-116 421.0 254 77.6
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 6.1e-116 421.0 254 77.6
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.0e-115 420.2 254 79.1
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 1.0e-115 420.2 249 78.3
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.0e-115 420.2 251 78.1
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 1.8e-115 419.5 254 77.2
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 1.8e-115 419.5 249 78.3
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 2.3e-115 419.1 250 76.4
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 2.3e-115 419.1 251 77.3
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 2.3e-115 419.1 254 78.7
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 3.0e-115 418.7 251 78.9
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 3.0e-115 418.7 246 79.3
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 3.0e-115 418.7 249 78.7
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 4.0e-115 418.3 249 77.5
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 4.0e-115 418.3 254 78.0
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 4.0e-115 418.3 245 78.8
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 5.2e-115 417.9 246 78.5
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 6.7e-115 417.5 249 77.5
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 6.7e-115 417.5 249 78.7
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 6.7e-115 417.5 254 76.4
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 8.8e-115 417.2 249 77.1
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.2e-114 416.8 251 76.9
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 1.5e-114 416.4 249 77.9
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 1.5e-114 416.4 250 78.0
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.5e-114 416.4 254 76.0
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.5e-114 416.4 254 76.0
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 1.5e-114 416.4 246 78.9
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 2.0e-114 416.0 249 77.9
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 2.0e-114 416.0 251 77.7
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.6e-114 415.6 254 76.4
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 2.6e-114 415.6 254 77.2
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 3.3e-114 415.2 254 77.2
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 4.4e-114 414.8 249 77.5
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 5.7e-114 414.5 248 78.6
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 5.7e-114 414.5 244 79.9
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 5.7e-114 414.5 263 74.9
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 5.7e-114 414.5 254 76.4
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 7.5e-114 414.1 249 77.5
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 7.5e-114 414.1 249 78.7
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 9.7e-114 413.7 249 77.5
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 9.7e-114 413.7 249 77.5
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 9.7e-114 413.7 282 72.0
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 9.7e-114 413.7 254 76.4
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 1.3e-113 413.3 249 77.5
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 1.3e-113 413.3 251 74.9
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 2.2e-113 412.5 246 77.2
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.2e-113 412.5 249 77.1
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 6.3e-113 411.0 249 77.1
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 8.2e-113 410.6 253 75.5
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 1.1e-112 410.2 253 76.3
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 1.8e-112 409.5 282 71.3
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 2.4e-112 409.1 248 78.2
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 2.4e-112 409.1 253 74.7
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 3.1e-112 408.7 249 76.3
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 5.3e-112 407.9 249 76.7
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 5.3e-112 407.9 258 77.1
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 7.0e-112 407.5 254 77.2
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 9.1e-112 407.1 249 76.7
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 1.2e-111 406.8 253 75.5
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 2.0e-111 406.0 254 76.4
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.0e-111 406.0 251 76.1
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 4.5e-111 404.8 249 73.9
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 4.5e-111 404.8 248 76.6
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.0e-110 403.7 249 75.5
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 1.3e-110 403.3 253 74.3
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 1.3e-110 403.3 253 74.3
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 3.8e-110 401.7 254 75.6
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 3.8e-110 401.7 254 75.6
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 3.8e-110 401.7 254 75.6
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 1.1e-109 400.2 254 74.8
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 1.5e-109 399.8 278 69.1
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 1.5e-109 399.8 254 75.2
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 1.9e-109 399.4 251 76.1
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 1.9e-109 399.4 248 74.2
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 3.2e-109 398.7 254 74.8
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 5.5e-109 397.9 249 73.9
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 7.2e-109 397.5 246 75.2
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 2.1e-108 396.0 251 73.7
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 2.7e-108 395.6 254 74.0
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 1.8e-107 392.9 255 74.9
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 4.0e-107 391.7 255 74.5
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 2.0e-106 389.4 255 73.7
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 2.6e-106 389.0 313 62.9
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 4.4e-106 388.3 255 74.5
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 2.2e-105 386.0 255 73.7
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 2.2e-105 386.0 255 73.7
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 2.2e-105 386.0 255 73.7
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 8.3e-105 384.0 246 70.7
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 5.4e-104 381.3 230 76.5
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.5e-103 378.6 249 72.7
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 2.2e-102 375.9 230 77.0
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 6.1e-100 367.9 250 68.0
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 9.8e-98 360.5 247 67.2
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 2.0e-95 352.8 243 64.2
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 4.5e-95 351.7 251 66.1
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 7.8e-95 350.9 237 71.7
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 2.3e-94 349.4 222 71.2
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 2.3e-94 349.4 222 71.2
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 3.3e-93 345.5 245 63.7
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 9.5e-93 344.0 242 64.9
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 2.8e-92 342.4 233 71.7
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 3.0e-91 339.0 213 79.3
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 3.4e-90 335.5 245 62.4
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 6.4e-89 331.3 250 63.2
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 7.0e-88 327.8 250 64.4
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 4.1e-80 302.0 200 72.0
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 2.8e-76 289.3 241 55.2
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 1.1e-72 277.3 231 59.7
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.7e-65 253.4 170 71.2
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 2.9e-65 252.7 171 69.6
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 4.3e-61 238.8 136 79.4
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 8.4e-57 224.6 113 85.0
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 3.4e-50 202.6 197 50.8
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 7.9e-47 191.4 166 61.4
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-43 180.6 190 52.1
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 1.2e-42 177.6 123 71.5
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 2.0e-42 176.8 96 82.3
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-40 169.5 154 48.7
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 1.5e-37 160.6 218 45.0
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 8.2e-36 154.8 86 74.4
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 2.7e-31 139.8 139 57.6
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 5.3e-27 125.6 59 84.7
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 6.9e-27 125.2 185 38.9
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 1.4e-19 100.9 49 81.6
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 9.1e-19 98.2 82 59.8
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.4e-18 96.3 52 76.9
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 6.5e-17 92.0 71 62.0
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 1.4e-16 90.9 55 76.4
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 1.9e-16 90.5 71 62.0
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 5.0e-09 65.9 207 27.5
Zm00001eb414970 Zea mays HOM05D002775 ORTHO05D003262 2.5e-08 63.5 205 25.9
Medtr7g039510 Medicago truncatula HOM05D002775 ORTHO05D003262 4.2e-08 62.8 202 27.7
TWI12G0226 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 5.5e-08 62.4 200 27.0
Lj2g0025171 Lotus japonicus HOM05D002775 ORTHO05D003262 7.2e-08 62.0 206 26.7
Phvul.002G086200 Phaseolus vulgaris HOM05D002775 ORTHO05D003262 9.4e-08 61.6 200 28.0
Lsat_1_v5_gn_8_52761 Lactuca sativa HOM05D002775 ORTHO05D003262 1.2e-07 61.2 200 28.0
Sabra10G0066200 Salix brachista HOM05D002775 ORTHO05D003262 1.6e-07 60.8 201 26.4
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 2.7e-07 60.1 200 26.5
Hund05890 Selenicereus undatus HOM05D002775 ORTHO05D003262 3.6e-07 59.7 204 25.5
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 3.6e-07 59.7 224 25.4
VMungo1215G1815 Vigna mungo HOM05D002775 ORTHO05D003262 3.6e-07 59.7 199 26.6
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 4.7e-07 59.3 205 26.3
Lalb_Chr10g0098201 Lupinus albus HOM05D002775 ORTHO05D003262 4.7e-07 59.3 206 27.7
PSO478G4429 Papaver somniferum HOM05D002775 ORTHO05D003262 4.7e-07 59.3 200 25.0
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 6.1e-07 58.9 207 26.1
ECA233G2285 Erigeron canadensis HOM05D002775 ORTHO05D003262 6.1e-07 58.9 200 26.5
Medtr5g040090 Medicago truncatula HOM05D002775 ORTHO05D003262 6.1e-07 58.9 206 26.7
PSO017G0262 Papaver somniferum HOM05D002775 ORTHO05D003262 6.1e-07 58.9 200 25.0
Thecc.02G350700 Theobroma cacao HOM05D002775 ORTHO05D003262 1.0e-06 58.2 199 25.6
Actinidia07834 Actinidia chinensis HOM05D002775 ORTHO05D003262 1.4e-06 57.8 186 26.3
COL.COLO4_22991 Corchorus olitorius HOM05D002775 ORTHO05D003262 1.4e-06 57.8 199 25.6
Potri.010G093900 Populus trichocarpa HOM05D002775 ORTHO05D003262 1.4e-06 57.8 201 25.9
GSVIVG01020006001 Vitis vinifera HOM05D002775 ORTHO05D003262 1.8e-06 57.4 200 25.0
Aa31LG1G740 Aethionema arabicum HOM05D002775 ORTHO05D003262 3.9e-06 56.2 162 27.8
Sc04g0008210 Simmondsia chinensis HOM05D002775 ORTHO05D003262 3.9e-06 56.2 204 27.0
Sed0026850 Sechium edule HOM05D002775 ORTHO05D003262 5.2e-06 55.8 204 26.0


User provided reference genes

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