Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.0e-81 307.4 245 100.0
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.5e-53 213.8 252 79.0
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.8e-52 209.5 255 77.6
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.2e-50 204.1 255 76.9
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 5.9e-42 175.3 303 64.7
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 3.6e-39 166.0 253 72.3
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.4e-38 164.1 249 71.1
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.2e-37 161.0 238 71.4
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.0e-37 160.2 249 70.7
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 2.6e-37 159.8 254 69.7
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 3.4e-37 159.5 254 69.7
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 4.4e-37 159.1 238 73.5
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 7.5e-37 158.3 253 68.4
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 9.8e-37 157.9 251 68.9
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 5.4e-35 152.1 255 67.8
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.2e-34 151.0 241 68.5
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 2.7e-34 149.8 251 56.6
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.0e-33 147.9 251 68.1
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 2.3e-33 146.7 245 68.2
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 3.9e-33 146.0 240 70.0
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 6.6e-33 145.2 246 67.1
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.5e-32 144.1 243 68.3
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 5.6e-32 142.1 251 67.3
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 7.3e-32 141.7 267 64.4
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 7.3e-32 141.7 253 64.8
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 9.5e-32 141.4 240 67.1
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 2.1e-31 140.2 246 67.9
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 3.6e-31 139.4 243 67.5
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 4.7e-31 139.0 275 62.9
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 8.1e-31 138.3 248 68.5
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 8.1e-31 138.3 249 66.3
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 5.2e-30 135.6 239 66.5
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 8.9e-30 134.8 240 65.8
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 3.4e-29 132.9 235 67.7
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 3.4e-29 132.9 247 65.6
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 2.2e-28 130.2 247 64.4
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 2.9e-28 129.8 71 88.7
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 2.9e-28 129.8 247 66.0
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 3.7e-28 129.4 241 64.3
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 3.7e-28 129.4 70 85.7
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 6.4e-28 128.6 253 63.6
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 8.3e-28 128.3 243 65.4
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 8.3e-28 128.3 256 64.1
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 1.4e-27 127.5 248 66.1
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.4e-27 127.5 244 65.2
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 3.2e-27 126.3 239 66.5
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 3.2e-27 126.3 257 61.9
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 4.1e-27 125.9 239 66.5
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.4e-27 125.6 239 65.3
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 7.1e-27 125.2 239 65.3
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 7.1e-27 125.2 239 65.7
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 7.1e-27 125.2 253 63.6
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 7.1e-27 125.2 255 63.1
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 9.2e-27 124.8 74 81.1
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 1.6e-26 124.0 78 74.4
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 2.1e-26 123.6 248 62.9
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 3.5e-26 122.9 69 85.5
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 4.6e-26 122.5 262 61.8
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 6.0e-26 122.1 68 86.8
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 6.0e-26 122.1 245 64.5
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 1.3e-25 120.9 267 60.7
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 2.3e-25 120.2 257 60.7
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 3.0e-25 119.8 245 62.9
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 5.1e-25 119.0 69 81.2
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 5.1e-25 119.0 240 65.0
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.1e-24 117.9 240 65.0
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.5e-24 117.5 240 64.6
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 3.3e-24 116.3 236 65.3
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 3.3e-24 116.3 236 65.3
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 3.3e-24 116.3 69 81.2
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 5.6e-24 115.5 237 65.4
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 5.6e-24 115.5 237 65.4
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 5.6e-24 115.5 237 64.1
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 7.3e-24 115.2 251 51.4
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 7.3e-24 115.2 241 65.6
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 9.5e-24 114.8 67 79.1
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.6e-23 114.0 262 59.5
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 2.1e-23 113.6 70 75.7
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 2.1e-23 113.6 235 64.7
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 4.7e-23 112.5 249 61.0
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 8.1e-23 111.7 234 64.5
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 5.2e-22 109.0 263 60.1
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 6.8e-22 108.6 240 62.5
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 2.6e-21 106.7 263 58.2
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 2.6e-21 106.7 263 58.2
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 3.4e-21 106.3 235 65.5
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 9.9e-21 104.8 245 61.2
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 1.7e-20 104.0 237 62.9
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 2.2e-20 103.6 68 70.6
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 2.2e-20 103.6 236 63.6
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 2.2e-20 103.6 205 69.8
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 2.4e-19 100.1 256 60.2
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 2.4e-19 100.1 245 59.6
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 3.2e-19 99.8 67 71.6
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 7.1e-19 98.6 69 72.5
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 1.2e-18 97.8 71 63.4
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 6.0e-18 95.5 69 71.0
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 7.8e-18 95.1 205 68.3
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 3.9e-17 92.8 373 44.0
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 5.1e-17 92.4 75 64.0
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 4.3e-16 89.4 68 60.3
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 4.3e-16 89.4 286 52.8
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 8.1e-15 85.1 206 35.9
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 3.4e-13 79.7 106 51.9
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 5.8e-13 79.0 101 46.5
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 4.9e-12 75.9 197 51.3
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 6.4e-12 75.5 265 55.8
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.4e-11 74.3 205 64.9
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.9e-11 73.9 62 59.7
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 2.4e-11 73.6 70 58.6
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 6.0e-10 68.9 251 53.4
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.3e-09 67.0 34 88.2
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 3.0e-09 66.6 51 56.9
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 1.9e-08 63.9 45 62.2
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.3e-08 62.8 36 83.3
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.6e-07 60.8 36 80.6
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 4.8e-07 59.3 190 61.1


User provided reference genes

Program Settings