Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.5e-89 331.3 206 100.0
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 6.5e-82 307.8 206 94.7
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.5e-49 199.5 208 68.8
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.6e-43 180.3 209 65.6
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.0e-43 179.9 208 56.7
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.7e-43 179.5 200 62.5
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.9e-43 178.3 212 63.2
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.8e-42 175.6 207 58.9
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 5.0e-42 175.3 206 65.5
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.1e-41 174.1 121 75.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.9e-41 173.3 208 65.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.5e-41 172.9 207 60.4
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.2e-40 170.6 204 60.8
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.7e-40 168.7 206 63.6
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 3.4e-38 162.5 210 60.5
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 7.5e-38 161.4 209 55.5
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.3e-37 160.6 227 58.1
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.1e-36 157.5 209 62.2
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.1e-36 157.5 206 60.2
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.4e-36 157.1 208 52.4
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.8e-36 156.8 208 59.6
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.8e-36 156.8 197 63.5
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.8e-36 156.8 208 60.6
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.4e-36 156.4 206 55.3
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 4.1e-36 155.6 206 56.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.7e-35 152.9 206 57.3
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.5e-35 152.5 206 57.3
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 4.5e-35 152.1 206 49.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 5.9e-35 151.8 142 60.6
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.0e-34 151.0 209 58.4
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.9e-34 149.4 209 56.0
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 3.8e-34 149.1 206 56.8
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.8e-34 149.1 213 58.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-34 148.3 206 49.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.1e-33 147.5 210 53.8
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.5e-33 147.1 207 54.6
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.5e-33 147.1 207 56.5
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.5e-33 146.4 228 51.8
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 3.3e-33 146.0 139 59.0
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 4.2e-33 145.6 209 54.1
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 5.5e-33 145.2 207 50.2
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 5.5e-33 145.2 204 58.3
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 7.2e-33 144.8 213 56.8
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.2e-32 144.1 142 57.7
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.2e-32 144.1 145 59.3
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-32 143.7 210 52.4
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.6e-32 143.7 207 47.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 3.6e-32 142.5 142 57.0
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 4.7e-32 142.1 138 59.4
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 4.7e-32 142.1 206 53.9
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 6.1e-32 141.7 146 58.2
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 8.0e-32 141.4 235 51.1
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.8e-31 140.2 201 51.2
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.8e-31 140.2 207 54.1
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.3e-31 139.8 206 51.5
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.3e-31 139.8 137 60.6
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.3e-31 139.8 207 59.9
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.3e-31 139.8 206 55.3
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.0e-31 139.4 142 57.0
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.0e-31 139.0 136 60.3
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.2e-31 138.7 208 58.2
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 5.2e-31 138.7 185 53.5
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 6.8e-31 138.3 135 61.5
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 8.9e-31 137.9 206 57.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 8.9e-31 137.9 206 56.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.5e-30 137.1 139 59.7
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.5e-30 137.1 208 49.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.5e-30 137.1 138 60.1
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.6e-30 136.3 206 45.6
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.6e-30 136.3 134 60.4
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.4e-30 136.0 205 49.3
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.4e-30 135.6 204 48.0
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 7.5e-30 134.8 208 49.0
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 7.5e-30 134.8 203 56.2
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 7.5e-30 134.8 137 57.7
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.7e-29 133.7 142 55.6
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.7e-29 133.7 208 50.5
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.2e-29 133.3 139 59.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.2e-29 133.3 206 55.8
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 6.3e-29 131.7 139 54.7
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.1e-28 131.0 138 55.1
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.8e-28 130.2 206 48.5
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.1e-28 129.0 135 56.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.2e-27 127.5 208 54.8
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.6e-27 127.1 187 53.5
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.6e-27 127.1 208 55.3
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.7e-27 126.3 138 58.7
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.5e-27 125.9 139 54.0
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.5e-27 125.9 134 56.7
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 4.5e-27 125.6 217 50.2
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 5.9e-27 125.2 203 45.8
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 5.9e-27 125.2 221 44.3
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.0e-26 124.4 208 49.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.7e-26 123.6 208 46.6
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.3e-26 123.2 188 52.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 2.9e-26 122.9 98 68.4
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 6.6e-26 121.7 134 57.5
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 8.6e-26 121.3 215 42.8
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 8.6e-26 121.3 212 53.3
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.9e-25 120.2 157 55.4
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 2.1e-24 116.7 85 71.8
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.1e-24 116.7 209 40.2
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 6.1e-24 115.2 140 52.1
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.3e-23 113.2 120 58.3
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.0e-23 112.8 135 54.8
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.5e-22 110.5 136 53.7
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.3e-21 107.5 141 46.8
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.7e-21 107.1 140 47.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.9e-21 106.3 139 48.9
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-20 104.0 85 65.9
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.2e-20 102.8 185 42.7
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 7.0e-20 101.7 141 48.9
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.2e-19 100.9 148 62.8
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.7e-19 99.8 147 48.3
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 4.6e-19 99.0 144 44.4
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 6.0e-19 98.6 136 46.3
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 6.0e-19 98.6 136 46.3
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 6.0e-19 98.6 136 46.3
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.7e-18 97.1 73 69.9
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.3e-18 96.7 123 49.6
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.0e-18 96.3 123 48.8
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 3.0e-18 96.3 123 50.4
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 3.0e-18 96.3 123 48.8
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.0e-18 96.3 123 48.8
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.0e-18 96.3 123 50.4
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 3.0e-18 96.3 139 47.5
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-17 94.0 124 48.4
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 2.5e-17 93.2 84 58.3
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.3e-17 92.8 138 62.3
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 7.3e-17 91.7 140 46.4
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 7.3e-17 91.7 208 41.3
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 7.3e-17 91.7 208 41.3
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-16 90.9 124 48.4
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.2e-16 90.9 124 48.4
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.1e-16 90.1 207 44.9
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.8e-16 89.7 141 41.1
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 3.6e-16 89.4 61 77.0
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 8.0e-16 88.2 208 40.4
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.1e-15 87.8 125 45.6
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 6.8e-15 85.1 154 42.9
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 5.8e-14 82.0 64 68.8
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.2e-13 80.1 58 72.4
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 3.7e-13 79.3 74 60.8
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.0e-11 72.0 66 60.6
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 7.8e-11 71.6 119 42.0
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.3e-10 70.1 47 74.5
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.0e-10 68.9 86 45.3
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.2e-08 64.3 128 39.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-08 63.9 54 63.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.0e-07 59.3 125 46.4


User provided reference genes

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