Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.4e-167 591.7 314 100.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.4e-152 543.1 314 93.6
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.8e-82 307.8 314 61.8
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-81 307.4 316 61.4
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.0e-78 297.7 303 58.1
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 8.1e-68 261.5 324 58.3
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 5.8e-66 255.4 314 50.6
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.4e-64 248.8 314 51.6
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 7.1e-64 248.4 314 51.6
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 8.7e-62 241.5 314 49.4
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.6e-60 237.3 312 51.6
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.8e-60 235.7 319 45.1
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.4e-59 234.2 319 45.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.8e-59 233.8 316 48.7
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.0e-58 230.3 346 46.0
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.6e-58 229.9 315 43.5
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.4e-58 229.6 323 48.6
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.7e-57 227.3 332 45.2
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.8e-57 226.1 331 44.1
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 6.4e-57 225.3 326 47.9
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.1e-56 224.6 336 50.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.4e-56 223.4 328 43.0
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 4.2e-56 222.6 332 47.9
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 5.4e-56 222.2 297 50.2
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.2e-55 221.1 191 60.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.1e-55 220.3 324 47.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.3e-54 216.9 322 44.4
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.6e-54 215.3 323 42.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 8.7e-54 214.9 330 47.0
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.5e-53 214.2 300 47.0
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 3.3e-53 213.0 325 44.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.3e-53 212.6 332 46.7
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.8e-52 209.9 322 43.2
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.1e-51 208.0 322 42.5
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.8e-51 207.2 321 45.5
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.4e-51 206.8 319 46.7
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 7.6e-50 201.8 320 44.4
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 9.9e-50 201.4 320 45.9
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.9e-50 201.4 320 45.6
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.8e-49 199.5 320 45.3
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 4.9e-49 199.1 317 41.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.9e-48 197.2 320 45.0
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.9e-48 197.2 316 41.5
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.2e-48 196.4 320 40.9
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 7.1e-48 195.3 321 44.2
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 9.3e-48 194.9 337 44.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 3.5e-47 193.0 312 39.1
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 7.9e-47 191.8 308 46.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.3e-45 186.4 312 45.2
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.3e-44 184.5 316 38.3
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 4.8e-44 182.6 323 45.8
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.1e-43 181.4 301 40.9
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.4e-43 181.0 313 36.7
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.4e-43 181.0 316 43.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.8e-43 180.6 322 41.0
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.8e-43 180.6 327 36.4
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.8e-43 180.6 313 40.9
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.1e-43 179.9 327 41.6
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.6e-42 176.8 326 36.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.3e-41 174.5 317 37.5
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 2.9e-41 173.3 306 37.6
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.8e-41 172.9 275 42.2
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 4.9e-41 172.6 310 41.6
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.4e-40 171.0 326 36.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.4e-40 171.0 309 39.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 9.3e-40 168.3 325 36.6
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.0e-38 163.3 326 36.8
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 5.1e-38 162.5 310 42.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 5.1e-38 162.5 330 38.8
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 6.7e-38 162.2 318 43.1
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.7e-38 162.2 321 36.4
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 8.7e-38 161.8 320 43.4
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 8.7e-38 161.8 323 38.7
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.1e-37 161.4 284 40.8
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.1e-37 161.4 285 39.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.5e-37 160.2 315 41.9
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.3e-36 157.9 314 37.6
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.6e-36 157.5 201 48.8
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.6e-36 157.5 271 44.3
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 2.1e-36 157.1 333 41.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.1e-36 157.1 326 39.9
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.8e-36 156.8 313 43.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 6.3e-36 155.6 335 40.9
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 8.2e-36 155.2 320 39.1
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 8.2e-36 155.2 333 41.1
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-35 154.5 333 41.4
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-35 154.5 322 42.5
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-35 154.5 298 39.6
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.4e-35 154.5 330 41.2
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.8e-35 154.1 329 40.1
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.1e-35 152.9 322 42.2
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.1e-35 152.9 322 42.2
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 5.3e-35 152.5 321 39.6
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 9.0e-35 151.8 332 40.7
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-34 151.4 322 41.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-34 151.4 322 41.6
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 5.9e-34 149.1 320 38.8
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 7.6e-34 148.7 330 40.9
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.7e-33 147.5 335 40.9
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 6.5e-33 145.6 330 39.1
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 8.5e-33 145.2 298 35.2
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.1e-32 144.8 335 40.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.4e-32 144.4 330 38.5
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.3e-32 141.7 312 35.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.2e-31 141.4 326 39.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.6e-31 139.4 312 34.9
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 3.0e-30 136.7 269 46.8
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.9e-30 136.3 312 36.9
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 5.1e-30 136.0 329 33.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 7.4e-29 132.1 304 34.5
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.8e-28 130.2 289 31.5
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.8e-28 130.2 309 35.0
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 3.7e-28 129.8 303 35.6
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.1e-27 126.7 300 40.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 3.1e-27 126.7 304 35.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.0e-26 124.0 312 31.4
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.4e-26 123.2 322 37.0
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 7.7e-26 122.1 314 31.5
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.7e-25 120.9 298 32.6
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 2.5e-24 117.1 161 43.5
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.2e-24 116.3 312 32.1
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-23 114.8 310 35.2
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.7e-23 113.6 270 34.8
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.0e-22 111.7 191 36.1
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.8e-22 110.9 308 37.3
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 6.7e-22 109.0 310 36.5
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.1e-21 108.2 299 38.5
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.7e-21 105.9 269 37.2
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.4e-21 105.5 309 33.3
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 7.4e-21 105.5 313 34.8
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 7.4e-21 105.5 313 34.8
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 7.4e-21 105.5 313 34.8
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.3e-20 104.8 266 39.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.7e-20 104.4 328 28.0
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.2e-20 104.0 195 35.4
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.8e-20 103.6 302 38.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.7e-20 103.2 310 31.3
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 5.3e-19 99.4 197 39.6
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 9.1e-19 98.6 252 36.1
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.6e-18 97.1 309 32.4
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.4e-18 96.7 304 32.6
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.7e-18 95.5 262 37.8
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-17 95.1 309 31.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.2e-17 94.0 303 29.7
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.6e-15 87.8 239 32.2
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.1e-15 87.4 313 35.8
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.0e-14 83.6 312 31.7
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 6.7e-14 82.4 299 31.1
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 3.3e-13 80.1 264 31.8
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 7.4e-13 79.0 129 38.0
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.4e-11 74.7 241 32.4
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 7.0e-11 72.4 161 36.0
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 5.9e-10 69.3 301 27.2
SEGI_14232 Sequoiadendron giganteum HOM05D017838 ORTHO05D018381 9.4e-08 62.0 164 29.9
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.2e-06 56.2 179 31.3


User provided reference genes

Program Settings