Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.8e-48 193.4 90 100.0
CSS0038006 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 1.2e-11 73.2 60 63.3
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.4e-11 71.6 42 76.2
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.4e-11 71.6 42 76.2
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.4e-11 71.6 42 76.2
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.7e-10 69.3 38 78.9
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.7e-10 69.3 38 78.9
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.7e-10 69.3 38 78.9
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.2e-10 68.9 41 78.0
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.9e-10 68.6 42 81.0
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 3.8e-10 68.2 42 76.2
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 6.4e-10 67.4 42 76.2
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.4e-10 67.4 38 76.3
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.1e-09 66.6 38 81.6
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.4e-09 66.2 42 78.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.9e-09 65.9 42 73.8
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.9e-09 65.9 42 73.8
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.9e-09 65.9 42 73.8
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 2.4e-09 65.5 42 71.4
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.4e-09 65.5 42 76.2
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.4e-09 64.3 42 76.2
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 9.3e-09 63.5 42 73.8
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 9.3e-09 63.5 34 79.4
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.2e-08 63.2 42 69.0
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-08 62.8 38 73.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-08 62.8 38 73.7
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-08 62.8 38 73.7
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.6e-08 62.8 42 73.8
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.1e-08 62.4 42 66.7
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.1e-08 62.4 42 71.4
CSS0027117 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D043337 2.7e-08 62.0 44 65.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 2.7e-08 62.0 42 73.8
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 2.7e-08 62.0 38 73.7
CSS0019773 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D003259 3.5e-08 61.6 48 62.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.5e-08 61.6 38 76.3
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 4.6e-08 61.2 42 69.0
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.6e-08 61.2 42 66.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 6.0e-08 60.8 38 73.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 6.0e-08 60.8 42 64.3
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 6.0e-08 60.8 38 76.3
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 6.0e-08 60.8 42 71.4
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 6.0e-08 60.8 42 66.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 6.0e-08 60.8 42 66.7
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 7.8e-08 60.5 38 73.7
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 7.8e-08 60.5 42 66.7
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.0e-07 60.1 42 64.3
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.0e-07 60.1 38 73.7
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.3e-07 59.7 42 73.8
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.3e-07 59.7 42 73.8
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.7e-07 59.3 42 69.0
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.7e-07 59.3 37 70.3
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.7e-07 59.3 42 66.7
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 1.7e-07 59.3 42 66.7
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.7e-07 59.3 42 66.7
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.7e-07 59.3 38 71.1
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 1.7e-07 59.3 39 69.2
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.3e-07 58.9 42 64.3
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.3e-07 58.9 42 71.4
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.3e-07 58.9 42 66.7
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.3e-07 58.9 42 69.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 3.0e-07 58.5 42 66.7
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 3.0e-07 58.5 42 64.3
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.0e-07 58.5 42 61.9
CSS0022204 Camellia sinensis var. sinensis HOM05D001139 ORTHO05D043337 3.9e-07 58.2 44 63.6
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 3.9e-07 58.2 42 66.7
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 3.9e-07 58.2 49 55.1
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 3.9e-07 58.2 42 66.7
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 5.1e-07 57.8 42 66.7
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 5.1e-07 57.8 38 65.8
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 5.1e-07 57.8 42 66.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 5.1e-07 57.8 38 65.8
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 6.6e-07 57.4 42 64.3
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 6.6e-07 57.4 42 64.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 6.6e-07 57.4 42 69.0
CSS0001888 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 8.7e-07 57.0 39 64.1
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 8.7e-07 57.0 44 63.6
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 8.7e-07 57.0 38 71.1
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.1e-06 56.6 38 63.2
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.1e-06 56.6 42 64.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.1e-06 56.6 42 64.3
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.5e-06 56.2 34 73.5
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.5e-06 56.2 38 65.8
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 1.5e-06 56.2 42 64.3
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 1.9e-06 55.8 38 73.7
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.9e-06 55.8 35 71.4
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.5e-06 55.5 43 65.1
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 2.5e-06 55.5 42 64.3
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 3.3e-06 55.1 49 53.1
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.3e-06 55.1 42 59.5
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.3e-06 55.1 42 59.5
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 3.3e-06 55.1 42 66.7
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.3e-06 55.1 37 70.3
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 3.3e-06 55.1 38 65.8
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 3.3e-06 55.1 42 64.3
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 3.3e-06 55.1 47 59.6
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 4.3e-06 54.7 38 65.8
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 4.3e-06 54.7 34 73.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.3e-06 54.7 42 64.3
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 5.6e-06 54.3 42 64.3
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 5.6e-06 54.3 42 64.3
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 7.3e-06 53.9 34 73.5
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 7.3e-06 53.9 34 73.5
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 7.3e-06 53.9 34 73.5
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 7.3e-06 53.9 34 73.5
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 7.3e-06 53.9 34 73.5
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.3e-06 53.9 42 61.9
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 7.3e-06 53.9 62 46.8
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 9.6e-06 53.5 34 70.6
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 9.6e-06 53.5 42 61.9


User provided reference genes

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