Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 3.1e-59 231.5 107 100.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 4.0e-27 124.8 102 59.8
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.1e-23 112.5 101 54.5
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 4.6e-23 111.3 101 53.5
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.3e-22 109.8 100 58.0
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 5.6e-21 104.4 101 55.4
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.8e-20 102.1 98 54.1
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 8.1e-20 100.5 103 47.6
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 8.1e-20 100.5 108 45.4
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-19 100.1 101 49.5
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 2.4e-19 99.0 121 45.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 5.3e-19 97.8 98 56.1
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 5.3e-19 97.8 106 47.2
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 5.3e-19 97.8 106 47.2
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 6.9e-19 97.4 106 47.2
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 9.0e-19 97.1 110 45.5
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 9.0e-19 97.1 110 45.5
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 9.0e-19 97.1 96 50.0
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 9.0e-19 97.1 79 55.7
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.2e-18 96.7 105 47.6
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.2e-18 96.7 104 46.2
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.2e-18 96.7 100 50.0
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 1.5e-18 96.3 112 43.8
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 3.4e-18 95.1 105 46.7
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 3.4e-18 95.1 105 46.7
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 3.4e-18 95.1 106 45.3
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.5e-18 94.7 108 44.4
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 4.5e-18 94.7 113 44.2
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 5.8e-18 94.4 105 46.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 5.8e-18 94.4 105 46.7
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.8e-18 94.4 105 45.7
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 9.9e-18 93.6 104 47.1
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 9.9e-18 93.6 104 47.1
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.3e-17 93.2 94 52.1
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.3e-17 93.2 104 49.0
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 2.9e-17 92.0 109 45.0
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.9e-17 92.0 101 44.6
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.9e-17 92.0 112 44.6
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 3.8e-17 91.7 101 49.5
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 6.4e-17 90.9 105 44.8
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 6.4e-17 90.9 100 46.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 6.4e-17 90.9 106 49.1
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 8.4e-17 90.5 104 46.2
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 8.4e-17 90.5 107 44.9
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.4e-16 89.7 121 42.1
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.4e-16 89.7 98 46.9
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.9e-16 89.4 106 45.3
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 2.4e-16 89.0 108 42.6
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.2e-16 88.2 110 44.5
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.5e-16 87.8 74 52.7
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 5.5e-16 87.8 114 38.6
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 9.3e-16 87.0 112 44.6
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 9.3e-16 87.0 57 61.4
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.2e-15 86.7 103 46.6
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.6e-15 86.3 95 52.6
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.7e-15 85.5 102 42.2
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 3.5e-15 85.1 96 49.0
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 3.5e-15 85.1 104 45.2
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 6.0e-15 84.3 103 42.7
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 6.0e-15 84.3 99 42.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 6.0e-15 84.3 103 47.6
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 7.9e-15 84.0 47 72.3
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 7.9e-15 84.0 60 61.7
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 7.9e-15 84.0 95 45.3
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.0e-14 83.6 115 38.3
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.0e-14 83.6 108 45.4
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.3e-14 83.2 95 44.2
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.8e-14 82.8 96 46.9
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.8e-14 82.8 96 41.7
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.8e-14 82.8 95 45.3
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.3e-14 82.4 92 46.7
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 3.0e-14 82.0 108 44.4
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.0e-14 82.0 108 44.4
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 3.9e-14 81.6 100 41.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 6.7e-14 80.9 56 64.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 8.7e-14 80.5 108 44.4
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 8.7e-14 80.5 96 44.8
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.1e-13 80.1 50 62.0
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.5e-13 79.7 56 64.3
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.5e-13 79.7 75 48.0
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.5e-13 79.7 77 48.1
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.9e-13 79.3 53 67.9
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.9e-13 79.3 101 39.6
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.9e-13 79.3 86 43.0
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.9e-13 79.3 102 45.1
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.5e-13 79.0 47 68.1
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 2.5e-13 79.0 66 47.0
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.5e-13 79.0 81 50.6
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.3e-13 78.2 47 68.1
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.4e-13 77.4 108 44.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.3e-12 76.6 106 41.5
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.3e-12 76.6 100 46.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 1.3e-12 76.6 113 40.7
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.6e-12 76.3 104 38.5
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 2.1e-12 75.9 60 61.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 2.8e-12 75.5 46 58.7
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 3.7e-12 75.1 74 50.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 4.8e-12 74.7 106 36.8
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 6.2e-12 74.3 81 46.9
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 6.2e-12 74.3 52 63.5
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 6.2e-12 74.3 107 43.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 8.2e-12 73.9 73 47.9
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 8.2e-12 73.9 56 57.1
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 5.3e-11 71.2 49 63.3
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 9.0e-11 70.5 115 36.5
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-10 70.1 47 57.4
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.5e-10 69.7 51 54.9
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 2.6e-10 68.9 47 59.6
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 2.6e-10 68.9 49 59.2
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 3.4e-10 68.6 93 41.9
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.4e-10 68.6 53 56.6
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.0e-09 67.0 47 55.3
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.3e-09 66.6 48 58.3
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.3e-09 66.6 98 40.8
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.7e-09 66.2 48 58.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.7e-09 66.2 64 45.3
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 8.4e-09 63.9 46 56.5
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-08 63.5 46 52.2
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.1e-08 63.5 46 56.5
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.9e-08 62.8 39 61.5
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.5e-08 62.4 41 56.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 4.2e-08 61.6 38 63.2
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 7.1e-08 60.8 49 49.0
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.2e-07 60.1 78 41.0
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.6e-07 59.7 43 55.8
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.7e-07 58.9 41 61.0
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.7e-07 58.9 40 65.0
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.5e-07 58.5 77 37.7


User provided reference genes

Program Settings