Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 7.8e-45 183.3 88 100.0
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 6.2e-42 173.7 83 100.0
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 9.3e-38 159.8 88 86.4
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 5.1e-36 154.1 88 83.0
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 1.9e-35 152.1 83 84.3
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 2.1e-34 148.7 88 79.5
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 4.8e-34 147.5 84 83.3
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 6.2e-34 147.1 80 86.2
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 1.7e-31 139.0 80 82.5
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 2.2e-31 138.7 80 81.2
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 2.9e-31 138.3 80 77.5
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 3.8e-31 137.9 83 75.9
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 3.8e-31 137.9 83 79.5
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 3.8e-31 137.9 85 75.3
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 4.9e-31 137.5 83 74.7
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 4.9e-31 137.5 84 77.4
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 4.9e-31 137.5 80 77.5
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 6.4e-31 137.1 83 78.3
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 8.4e-31 136.7 83 77.1
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 1.4e-30 136.0 81 76.5
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.4e-30 136.0 81 77.8
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 1.9e-30 135.6 83 74.7
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 1.9e-30 135.6 80 78.8
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 1.9e-30 135.6 83 74.7
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 1.9e-30 135.6 85 72.9
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 2.5e-30 135.2 82 74.4
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 2.5e-30 135.2 82 74.4
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 3.2e-30 134.8 80 76.2
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 3.2e-30 134.8 83 75.9
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 3.2e-30 134.8 83 75.9
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 4.2e-30 134.4 80 77.5
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 4.2e-30 134.4 81 76.5
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 4.2e-30 134.4 80 77.5
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 5.5e-30 134.0 80 77.5
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 5.5e-30 134.0 83 75.9
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 5.5e-30 134.0 83 77.1
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 7.1e-30 133.7 82 73.2
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 7.1e-30 133.7 80 75.0
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 7.1e-30 133.7 81 72.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 9.3e-30 133.3 80 77.5
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 9.3e-30 133.3 85 71.8
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 9.3e-30 133.3 80 76.2
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 1.2e-29 132.9 81 74.1
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.2e-29 132.9 80 75.0
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.2e-29 132.9 80 76.2
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 1.6e-29 132.5 85 72.9
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 1.6e-29 132.5 80 76.2
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 1.6e-29 132.5 82 75.6
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 2.1e-29 132.1 85 70.6
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 2.1e-29 132.1 80 76.2
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 2.7e-29 131.7 83 74.7
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 7.9e-29 130.2 80 70.0
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 1.0e-28 129.8 83 73.5
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 1.0e-28 129.8 82 74.4
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 1.0e-28 129.8 83 73.5
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 1.3e-28 129.4 82 74.4
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 2.3e-28 128.6 83 71.1
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 3.0e-28 128.3 80 72.5
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 6.7e-28 127.1 80 72.5
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 8.7e-28 126.7 80 70.0
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 8.7e-28 126.7 82 72.0
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.1e-27 126.3 81 71.6
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 1.5e-27 125.9 80 71.2
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 1.5e-27 125.9 80 71.2
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.5e-27 125.9 81 70.4
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 71.2
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 3.3e-27 124.8 80 68.8
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 3.3e-27 124.8 81 71.6
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 4.3e-27 124.4 80 71.2
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 4.3e-27 124.4 80 71.2
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 5.6e-27 124.0 80 67.5
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 5.6e-27 124.0 80 67.5
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 5.6e-27 124.0 80 76.2
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 7.4e-27 123.6 81 74.1
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 7.4e-27 123.6 81 74.1
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 9.6e-27 123.2 83 69.9
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 2.1e-26 122.1 80 72.5
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.8e-26 121.7 80 73.8
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 2.8e-26 121.7 80 73.8
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 4.8e-26 120.9 80 72.5
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 4.8e-26 120.9 80 72.5
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 4.8e-26 120.9 80 72.5
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.4e-25 119.4 80 71.2
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 1.4e-25 119.4 82 68.3
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 1.8e-25 119.0 81 69.1
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 2.4e-25 118.6 81 70.4
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 3.1e-25 118.2 80 70.0
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 3.1e-25 118.2 80 70.0
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 3.1e-25 118.2 80 70.0
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 6.9e-25 117.1 80 68.8
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 6.9e-25 117.1 80 68.8
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 9.0e-25 116.7 80 70.0
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 1.5e-24 115.9 80 70.0
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 2.0e-24 115.5 80 68.8
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 2.2e-23 112.1 70 74.3
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 2.9e-23 111.7 80 63.8
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 6.5e-23 110.5 71 70.4
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 1.6e-21 105.9 80 61.2
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 4.6e-21 104.4 84 61.9
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 5.1e-20 100.9 77 66.2
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 2.5e-19 98.6 94 57.4
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 3.7e-18 94.7 69 62.3
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 4.8e-18 94.4 61 70.5
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.8e-17 92.4 130 44.6
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 2.4e-17 92.0 84 58.3
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 6.9e-17 90.5 79 59.5
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 9.0e-17 90.1 108 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.9e-15 85.1 80 53.8
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.9e-14 82.4 80 52.5
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 5.1e-12 74.3 59 62.7
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 1.7e-10 69.3 75 45.3
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 6.3e-10 67.4 82 45.1
Hma1.2p1_2341F.1_g320300 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 6.9e-09 63.9 80 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.0e-08 62.4 58 53.4
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 1.9e-06 55.8 39 66.7


User provided reference genes

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