Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010422 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 7.0e-47 190.3 96 100.0
Dinv38844 Davidia involucrata HOM05D007275 ORTHO05D009279 2.8e-40 168.3 94 86.2
Actinidia22145 Actinidia chinensis HOM05D007275 ORTHO05D009279 8.3e-40 166.8 94 87.2
Ciclev10024283m.g Citrus clementina HOM05D007275 ORTHO05D009279 5.9e-38 160.6 94 83.0
CSS0024458 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 1.3e-37 159.5 96 83.3
Hma1.2p1_0359F.1_g135280 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.7e-37 159.1 96 82.3
GSVIVG01019513001 Vitis vinifera HOM05D007275 ORTHO05D009279 1.7e-37 159.1 94 81.9
Prupe.5G117300 Prunus persica HOM05D007275 ORTHO05D009279 2.3e-37 158.7 94 84.0
Nn1g01839 Nelumbo nucifera HOM05D007275 ORTHO05D009279 1.5e-36 156.0 94 80.9
Cc08_g15930 Coffea canephora HOM05D007275 ORTHO05D009279 4.3e-36 154.5 94 80.9
MD14G1123400 Malus domestica HOM05D007275 ORTHO05D009279 4.3e-36 154.5 94 80.9
Potri.001G092700 Populus trichocarpa HOM05D007275 ORTHO05D009279 4.3e-36 154.5 94 80.9
MBI06_g46619_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D009279 7.3e-36 153.7 96 79.2
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 7.3e-36 153.7 96 79.2
QL02p030913 Quercus lobata HOM05D007275 ORTHO05D009279 9.5e-36 153.3 94 78.7
TAR375G1117 Trochodendron aralioides HOM05D007275 ORTHO05D009279 9.5e-36 153.3 96 80.2
Phvul.002G297500 Phaseolus vulgaris HOM05D007275 ORTHO05D009279 1.2e-35 152.9 94 79.8
Thecc.03G296000 Theobroma cacao HOM05D007275 ORTHO05D009279 1.2e-35 152.9 94 79.8
Eucgr.D01727 Eucalyptus grandis HOM05D007275 ORTHO05D009279 1.6e-35 152.5 94 77.7
MD06G1104700 Malus domestica HOM05D007275 ORTHO05D009279 1.6e-35 152.5 94 79.8
Gohir.D11G024100 Gossypium hirsutum HOM05D007275 ORTHO05D009279 4.7e-35 151.0 94 77.7
Gorai.007G025800 Gossypium raimondii HOM05D007275 ORTHO05D009279 4.7e-35 151.0 94 77.7
Gohir.A11G024400 Gossypium hirsutum HOM05D007275 ORTHO05D009279 6.1e-35 150.6 94 77.7
Gohir.D12G236900 Gossypium hirsutum HOM05D007275 ORTHO05D009279 6.1e-35 150.6 94 77.7
Gorai.008G253500 Gossypium raimondii HOM05D007275 ORTHO05D009279 6.1e-35 150.6 94 77.7
Nn3g19047 Nelumbo nucifera HOM05D007275 ORTHO05D009279 6.1e-35 150.6 94 76.6
Peaxi162Scf00074g01033 Petunia axillaris HOM05D007275 ORTHO05D009279 6.1e-35 150.6 89 83.1
Cfa012796 Carpinus fangiana HOM05D007275 ORTHO05D009279 8.0e-35 150.2 95 81.1
Sabra01G0069000 Salix brachista HOM05D007275 ORTHO05D009279 8.0e-35 150.2 94 78.7
Gohir.A12G235700 Gossypium hirsutum HOM05D007275 ORTHO05D009279 1.4e-34 149.4 94 76.6
AUR62010827 Chenopodium quinoa HOM05D007275 ORTHO05D009279 1.8e-34 149.1 94 76.6
COL.COLO4_10681 Corchorus olitorius HOM05D007275 ORTHO05D009279 1.8e-34 149.1 94 77.7
Nitab4.5_0000726g0090 Nicotiana tabacum HOM05D007275 ORTHO05D009279 1.8e-34 149.1 91 79.1
Glyma.08G022200 Glycine max HOM05D007275 ORTHO05D009279 2.3e-34 148.7 92 78.3
Glyma.05G216300 Glycine max HOM05D007275 ORTHO05D009279 3.1e-34 148.3 92 79.3
Atru.chr9.2015 Acer truncatum HOM05D007275 ORTHO05D009279 4.0e-34 147.9 95 76.8
CAN.G532.107 Capsicum annuum HOM05D007275 ORTHO05D009279 4.0e-34 147.9 94 77.7
Hma1.2p1_0229F.1_g097175 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 4.0e-34 147.9 95 76.8
Hma1.2p1_0229F.1_g097200 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 4.0e-34 147.9 95 76.8
Sc01g0010220 Simmondsia chinensis HOM05D007275 ORTHO05D009279 4.0e-34 147.9 94 77.7
Lj4g0015273 Lotus japonicus HOM05D007275 ORTHO05D009279 5.2e-34 147.5 92 77.2
Nitab4.5_0010144g0020 Nicotiana tabacum HOM05D007275 ORTHO05D009279 5.2e-34 147.5 94 77.7
arahy.Tifrunner.gnm1.ann1.IALD8X Arachis hypogaea HOM05D007275 ORTHO05D009279 6.8e-34 147.1 94 72.3
TPR.G3422 Trifolium pratense HOM05D007275 ORTHO05D009279 6.8e-34 147.1 94 75.5
RcHm_v2.0_Chr7g0195121 Rosa chinensis HOM05D007275 ORTHO05D009279 8.9e-34 146.7 94 78.7
Haze_08628 Corylus avellana HOM05D007275 ORTHO05D009279 1.2e-33 146.4 95 77.9
Peaxi162Scf00117g01123 Petunia axillaris HOM05D007275 ORTHO05D009279 1.2e-33 146.4 94 76.6
arahy.Tifrunner.gnm1.ann1.GQP3LI Arachis hypogaea HOM05D007275 ORTHO05D009279 2.0e-33 145.6 94 71.3
DCAR_005035 Daucus carota HOM05D007275 ORTHO05D009279 2.0e-33 145.6 95 76.8
Sabra03G0100000 Salix brachista HOM05D007275 ORTHO05D009279 2.0e-33 145.6 93 75.3
FvH4_5g04420 Fragaria vesca HOM05D007275 ORTHO05D009279 2.6e-33 145.2 95 76.8
FAN18G1142 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.6e-33 145.2 95 76.8
FAN18G2266 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.6e-33 145.2 95 76.8
Manes.02G011100 Manihot esculenta HOM05D007275 ORTHO05D009279 2.6e-33 145.2 95 76.8
Nitab4.5_0000223g0330 Nicotiana tabacum HOM05D007275 ORTHO05D009279 2.6e-33 145.2 94 76.6
Oeu038573.1 Olea europaea HOM05D007275 ORTHO05D009279 2.6e-33 145.2 94 75.5
FAN08G0060 Fragaria x ananassa HOM05D007275 ORTHO05D009279 3.4e-33 144.8 94 76.6
TAR629G0721 Trochodendron aralioides HOM05D007275 ORTHO05D010861 5.8e-33 144.1 95 76.8
SalBow1G5261 Salvia bowleyana HOM05D007275 ORTHO05D009279 1.3e-32 142.9 94 73.4
PGSC0003DMG400012158 Solanum tuberosum HOM05D007275 ORTHO05D009279 1.7e-32 142.5 94 74.5
EL10Ac5g12903 Beta vulgaris HOM05D007275 ORTHO05D009279 2.2e-32 142.1 94 72.3
PGR031G2423 Punica granatum HOM05D007275 ORTHO05D009279 2.2e-32 142.1 94 71.3
Lalb_Chr16g0390621 Lupinus albus HOM05D007275 ORTHO05D009279 2.9e-32 141.7 93 72.0
Potri.003G138800 Populus trichocarpa HOM05D007275 ORTHO05D009279 3.7e-32 141.4 93 72.0
SalBow1G0766 Salvia bowleyana HOM05D007275 ORTHO05D009279 3.7e-32 141.4 94 72.3
Medtr8g099385 Medicago truncatula HOM05D007275 ORTHO05D009279 4.9e-32 141.0 93 73.1
Solyc08g082160.3 Solanum lycopersicum HOM05D007275 ORTHO05D009279 4.9e-32 141.0 94 75.5
Sopen08g030440 Solanum pennellii HOM05D007275 ORTHO05D009279 4.9e-32 141.0 94 75.5
CSS0026606 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 8.3e-32 140.2 68 100.0
CiPaw.12G084200 Carya illinoinensis HOM05D007275 ORTHO05D009279 1.4e-31 139.4 94 72.3
Dinv37542 Davidia involucrata HOM05D007275 ORTHO05D009279 1.9e-31 139.0 82 82.9
CANSAT21G2355 Cannabis sativa HOM05D007275 ORTHO05D009279 4.1e-31 137.9 92 75.0
FvH4_3g01740 Fragaria vesca HOM05D007275 ORTHO05D009279 7.0e-31 137.1 95 72.6
Migut.A00668 Erythranthe guttata HOM05D007275 ORTHO05D009279 2.0e-30 135.6 90 73.3
FAN13G1788 Fragaria x ananassa HOM05D007275 ORTHO05D009279 3.9e-29 131.3 123 59.3
HanXRQChr06g0166541 Helianthus annuus HOM05D007275 ORTHO05D009279 3.9e-29 131.3 91 69.2
ECA246G4125 Erigeron canadensis HOM05D007275 ORTHO05D009279 5.0e-29 131.0 93 67.7
Lsat_1_v5_gn_3_10301 Lactuca sativa HOM05D007275 ORTHO05D009279 8.6e-29 130.2 94 68.1
TWI60G1254 Tripterygium wilfordii HOM05D007275 ORTHO05D009279 1.9e-28 129.0 92 67.4
Aqoxy7G00131 Aquilegia oxysepala HOM05D007275 ORTHO05D009279 2.5e-28 128.6 94 68.1
HanXRQChr17g0535191 Helianthus annuus HOM05D007275 ORTHO05D009279 3.3e-28 128.3 94 64.9
ClCG07G014960 Citrullus lanatus HOM05D007275 ORTHO05D009279 2.1e-27 125.6 87 66.7
Zm00001eb338790 Zea mays HOM05D007275 ORTHO05D009279 2.1e-27 125.6 95 68.4
ATR0320G041 Amborella trichopoda HOM05D007275 ORTHO05D009279 5.2e-26 120.9 89 66.3
unitig_748.g8124 Utricularia gibba HOM05D007275 ORTHO05D009279 5.2e-26 120.9 90 68.9
AUR62019826 Chenopodium quinoa HOM05D007275 ORTHO05D009279 1.5e-25 119.4 75 74.7
CsaV3_4G006490 Cucumis sativus L. HOM05D007275 ORTHO05D009279 2.0e-25 119.0 93 62.4
BcaC09g50944 Brassica carinata HOM05D007275 ORTHO05D009279 2.6e-25 118.6 94 59.6
A01p15130 Brassica napus HOM05D007275 ORTHO05D009279 2.6e-25 118.6 94 59.6
C01p19030 Brassica napus HOM05D007275 ORTHO05D009279 2.6e-25 118.6 94 59.6
BolC1t01829H Brassica oleracea HOM05D007275 ORTHO05D009279 2.6e-25 118.6 94 59.6
MELO3C032816.2 Cucumis melo HOM05D007275 ORTHO05D009279 2.6e-25 118.6 92 63.0
BcaNung01088 Brassica carinata HOM05D007275 ORTHO05D009279 3.4e-25 118.2 94 59.6
BcaNung01089 Brassica carinata HOM05D007275 ORTHO05D009279 3.4e-25 118.2 94 59.6
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 7.5e-25 117.1 75 72.0
CDE10G0124 Ceratophyllum demersum HOM05D007275 ORTHO05D009279 7.5e-25 117.1 84 67.9
Nitab4.5_0007661g0010 Nicotiana tabacum HOM05D007275 ORTHO05D009279 7.5e-25 117.1 72 75.0
Hma1.2p1_2596F.1_g325120 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.3e-24 116.3 68 85.3
Oeu063532.1 Olea europaea HOM05D007275 ORTHO05D009279 1.7e-24 115.9 84 69.0
Sed0004885 Sechium edule HOM05D007275 ORTHO05D009279 2.2e-24 115.5 93 63.4
Psat7g026480 Pisum sativum HOM05D007275 ORTHO05D009279 3.7e-24 114.8 92 64.1
CDE10G0242 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 1.4e-23 112.8 83 65.1
Duzib068G1121 Durio zibethinus HOM05D007275 ORTHO05D009279 4.1e-23 111.3 70 80.0
SEGI_25349 Sequoiadendron giganteum HOM05D007275 ORTHO05D009279 1.0e-21 106.7 94 53.2
Rhsim02G0242000 Rhododendron simsii HOM05D007275 ORTHO05D009279 8.6e-21 103.6 67 80.6
FAN04G0348 Fragaria x ananassa HOM05D007275 ORTHO05D009279 4.7e-19 97.8 95 57.9
Thhalv10027148m.g Eutrema salsugineum HOM05D007275 ORTHO05D009279 6.0e-14 80.9 67 61.2
Lalb_Chr16g0390631 Lupinus albus HOM05D007275 ORTHO05D009279 3.3e-12 75.1 50 72.0
Aqoxy2G01184 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 1.4e-07 59.7 95 43.2
CDE06G1972 Ceratophyllum demersum HOM05D000015 ORTHO05D003525 5.4e-07 57.8 60 45.0
Aqoxy1G02962 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 7.1e-07 57.4 95 41.1
PSO541G1228 Papaver somniferum HOM05D000015 ORTHO05D009146 7.1e-07 57.4 56 51.8
Lsat_1_v5_gn_8_69380 Lactuca sativa HOM05D000015 ORTHO05D003525 9.3e-07 57.0 98 32.7
CANSAT56G2899 Cannabis sativa HOM05D000015 ORTHO05D009146 1.2e-06 56.6 56 51.8
Dinv13936 Davidia involucrata HOM05D000015 ORTHO05D009146 1.2e-06 56.6 57 52.6
ECA236G1637 Erigeron canadensis HOM05D000015 ORTHO05D009146 1.2e-06 56.6 91 37.4
CDE02G0421 Ceratophyllum demersum HOM05D000015 ORTHO05D003525 1.6e-06 56.2 59 45.8
AL3G52750 Arabidopsis lyrata HOM05D000015 ORTHO05D003525 2.1e-06 55.8 105 35.2
arahy.Tifrunner.gnm1.ann1.FEX8G7 Arachis hypogaea HOM05D000015 ORTHO05D003525 2.1e-06 55.8 56 48.2
arahy.Tifrunner.gnm1.ann1.FJ0G75 Arachis hypogaea HOM05D000015 ORTHO05D003525 2.1e-06 55.8 56 48.2
Duzib150G0884 Durio zibethinus HOM05D000015 ORTHO05D003525 3.5e-06 55.1 105 33.3
Manes.14G157400 Manihot esculenta HOM05D000015 ORTHO05D003525 3.5e-06 55.1 105 33.3
Potri.018G143400 Populus trichocarpa HOM05D000015 ORTHO05D003525 3.5e-06 55.1 103 35.0
Rhsim13G0150400 Rhododendron simsii HOM05D000015 ORTHO05D009146 3.5e-06 55.1 97 39.2
GSVIVG01010871001 Vitis vinifera HOM05D000015 ORTHO05D003525 3.5e-06 55.1 56 50.0
Carub.0003s3343 Capsella rubella HOM05D000015 ORTHO05D003525 4.6e-06 54.7 105 35.2
CiPaw.08G033100 Carya illinoinensis HOM05D000015 ORTHO05D003525 4.6e-06 54.7 56 48.2
Thhalv10022560m.g Eutrema salsugineum HOM05D000015 ORTHO05D003525 4.6e-06 54.7 105 36.2
Lj1A1236G69 Lonicera japonica HOM05D000015 ORTHO05D009146 4.6e-06 54.7 57 50.9
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 4.6e-06 54.7 79 41.8
Sp3g32560 Schrenkiella parvula HOM05D000015 ORTHO05D003525 4.6e-06 54.7 105 36.2
AT2G19170 Arabidopsis thaliana HOM05D000015 ORTHO05D003525 6.0e-06 54.3 102 35.3
Medtr4g132620 Medicago truncatula HOM05D000015 ORTHO05D009146 6.0e-06 54.3 74 41.9
QL03p004924 Quercus lobata HOM05D000015 ORTHO05D009146 6.0e-06 54.3 96 39.6
QL05p071991 Quercus lobata HOM05D000015 ORTHO05D009146 6.0e-06 54.3 96 39.6
THA.LOC104814659 Tarenaya hassleriana HOM05D000015 ORTHO05D003525 6.0e-06 54.3 105 33.3
Atru.chr7.770 Acer truncatum HOM05D000015 ORTHO05D003525 7.8e-06 53.9 103 33.0
Atru.chr7.789 Acer truncatum HOM05D000015 ORTHO05D003525 7.8e-06 53.9 103 33.0
Haze_06854 Corylus avellana HOM05D000015 ORTHO05D009146 7.8e-06 53.9 96 37.5


User provided reference genes

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