Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010382 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D026466 1.0e-67 260.0 135 100.0
CSS0006355 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 3.6e-17 92.0 57 84.2
Actinidia39856 Actinidia chinensis HOM05D000554 ORTHO05D000860 5.3e-16 88.2 55 80.0
Dinv07468 Davidia involucrata HOM05D000554 ORTHO05D000860 4.9e-14 81.6 56 71.4
Dinv22719 Davidia involucrata HOM05D000554 ORTHO05D000860 4.9e-14 81.6 56 71.4
Dinv44204 Davidia involucrata HOM05D000554 ORTHO05D000860 4.9e-14 81.6 56 75.0
Hma1.2p1_0754F.1_g213090 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 1.4e-13 80.1 56 69.6
ATR0743G035 Amborella trichopoda HOM05D000554 ORTHO05D000860 1.2e-12 77.0 56 73.2
TAR633G0921 Trochodendron aralioides HOM05D000554 ORTHO05D000860 2.1e-12 76.3 56 71.4
TAR362G1220 Trochodendron aralioides HOM05D000554 ORTHO05D000860 2.7e-12 75.9 56 71.4
Lsat_1_v5_gn_0_14601 Lactuca sativa HOM05D000554 ORTHO05D000860 4.6e-12 75.1 57 68.4
CSS0011681 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.7e-11 70.9 59 62.7
Sc06g0004950 Simmondsia chinensis HOM05D000554 ORTHO05D000860 8.7e-11 70.9 55 67.3
CSS0046528 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-10 70.5 59 66.1
AUR62000277 Chenopodium quinoa HOM05D000554 ORTHO05D000860 1.9e-10 69.7 84 52.4
Dinv21356 Davidia involucrata HOM05D000554 ORTHO05D026466 1.9e-10 69.7 80 56.2
Hma1.2p1_0620F.1_g190550 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 2.5e-10 69.3 58 70.7
TAR636G3407 Trochodendron aralioides HOM05D000554 ORTHO05D000860 2.5e-10 69.3 56 67.9
EL10Ac4g10019 Beta vulgaris HOM05D000554 ORTHO05D000860 3.3e-10 68.9 56 64.3
Sc09g0001360 Simmondsia chinensis HOM05D000554 ORTHO05D000860 9.6e-10 67.4 55 61.8
Actinidia34615 Actinidia chinensis HOM05D000554 ORTHO05D000860 2.1e-09 66.2 58 65.5
CSS0007093 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-09 66.2 52 67.3
CSS0012969 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 2.1e-09 66.2 60 63.3
CSS0031199 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.8e-09 65.9 59 62.7
HanXRQChr16g0511861 Helianthus annuus HOM05D000554 ORTHO05D000860 2.8e-09 65.9 56 62.5
CDE04G3385 Ceratophyllum demersum HOM05D000554 ORTHO05D000860 4.8e-09 65.1 56 58.9
Aqoxy6G02506 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.2e-09 64.7 65 47.7
HPP92_004556 Vanilla planifolia HOM05D000554 ORTHO05D000860 6.2e-09 64.7 60 60.0
CSS0006009 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-08 63.9 59 61.0
HanXRQChr16g0502621 Helianthus annuus HOM05D000554 ORTHO05D000860 1.1e-08 63.9 57 66.7
Nn1g09599 Nelumbo nucifera HOM05D000554 ORTHO05D000860 1.1e-08 63.9 56 64.3
Oeu001025.1 Olea europaea HOM05D000003 ORTHO05D000006 1.4e-08 63.5 70 51.4
Oeu001477.2 Olea europaea HOM05D000003 ORTHO05D000514 1.4e-08 63.5 74 50.0
Rhsim02G0076100 Rhododendron simsii HOM05D000554 ORTHO05D000860 1.4e-08 63.5 56 66.1
Ah.04g159260 Amaranthus hybridus HOM05D000554 ORTHO05D026466 1.8e-08 63.2 56 64.3
CSS0015339 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-08 63.2 59 62.7
Oeu044182.1 Olea europaea HOM05D000003 ORTHO05D000004 1.8e-08 63.2 70 47.1
Oeu000958.1 Olea europaea HOM05D000412 ORTHO05D000429 2.4e-08 62.8 59 57.6
Oeu038378.2 Olea europaea HOM05D000003 ORTHO05D001174 3.1e-08 62.4 121 39.7
SHI09342 Sapria himalayana HOM05D000003 ORTHO05D000004 3.1e-08 62.4 59 54.2
SHI09511 Sapria himalayana HOM05D000003 ORTHO05D000004 3.1e-08 62.4 59 54.2
SHI29190 Sapria himalayana HOM05D000003 ORTHO05D000004 3.1e-08 62.4 59 54.2
SHI45326 Sapria himalayana HOM05D000003 ORTHO05D000004 3.1e-08 62.4 59 54.2
SHI47243 Sapria himalayana HOM05D000003 ORTHO05D000004 3.1e-08 62.4 59 54.2
Lsat_1_v5_gn_1_69320 Lactuca sativa HOM05D000554 ORTHO05D000860 4.0e-08 62.0 57 61.4
Nn7g37647 Nelumbo nucifera HOM05D000554 ORTHO05D000860 4.0e-08 62.0 56 62.5
CSS0035103 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.3e-08 61.6 52 59.6
CSS0047691 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.9e-08 61.2 58 62.1
vmacro00609 Vaccinium macrocarpon HOM05D000554 ORTHO05D000860 6.9e-08 61.2 60 65.0
Aqoxy7G01851 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.0e-08 60.8 62 51.6
Sopen01g037960 Solanum pennellii HOM05D000003 ORTHO05D000004 9.0e-08 60.8 61 47.5
Aqoxy4G01058 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.2e-07 60.5 65 47.7
CDE07G0107 Ceratophyllum demersum HOM05D000554 ORTHO05D000860 1.2e-07 60.5 55 56.4
PSO675G4334 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-07 60.5 70 47.1
SHI23487 Sapria himalayana HOM05D000003 ORTHO05D000004 1.2e-07 60.5 59 50.8
Aqoxy1G02304 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.5e-07 60.1 69 46.4
ECA232G4534 Erigeron canadensis HOM05D000554 ORTHO05D000860 1.5e-07 60.1 56 57.1
MBI11_g40785_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D000860 1.5e-07 60.1 55 65.5
QL05p086823 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-07 60.1 59 54.2
QL12p026404 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-07 60.1 59 54.2
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-07 59.3 68 51.5
CDE02G3725 Ceratophyllum demersum HOM05D000554 ORTHO05D000860 2.6e-07 59.3 56 60.7
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 2.6e-07 59.3 59 50.8
PSO729G0003 Papaver somniferum HOM05D000003 ORTHO05D000004 2.6e-07 59.3 67 50.7
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 3.4e-07 58.9 66 48.5
SHI34096 Sapria himalayana HOM05D000003 ORTHO05D000004 3.4e-07 58.9 59 50.8
CBR_g30868 Chara braunii HOM05D000003 ORTHO05D000004 4.5e-07 58.5 59 49.2
Aqoxy1G03491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.8e-07 58.2 70 44.3
Aqoxy4G01518 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.8e-07 58.2 69 44.9
MBI12_g01748_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 5.8e-07 58.2 59 47.5
PSO170G0050 Papaver somniferum HOM05D000003 ORTHO05D000004 5.8e-07 58.2 67 49.3
Sopen07g025600 Solanum pennellii HOM05D000003 ORTHO05D000004 5.8e-07 58.2 58 46.6
Aqoxy2G00968 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.6e-07 57.8 69 44.9
Aqoxy5G03103 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.6e-07 57.8 69 44.9
Oeu029571.1 Olea europaea HOM05D000554 ORTHO05D000860 1.0e-06 57.4 59 55.9
PSO063G6845 Papaver somniferum HOM05D000003 ORTHO05D000004 1.0e-06 57.4 71 47.9
PGR083G1164 Punica granatum HOM05D000554 ORTHO05D000860 1.0e-06 57.4 59 59.3
Zm00001eb078850 Zea mays HOM05D000554 ORTHO05D000860 1.0e-06 57.4 56 53.6
Atru.chr3.3444 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.0 60 53.3
Aqoxy6G01926 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.3e-06 57.0 70 42.9
CBR_g17159 Chara braunii HOM05D000019 ORTHO05D003718 1.3e-06 57.0 59 45.8
CBR_g20405 Chara braunii HOM05D000003 ORTHO05D000004 1.3e-06 57.0 59 45.8
CBR_g28709 Chara braunii HOM05D007864 ORTHO05D000004 1.3e-06 57.0 59 49.2
CBR_g52393 Chara braunii HOM05D000409 ORTHO05D000004 1.3e-06 57.0 59 47.5
CBR_g57060 Chara braunii HOM05D007864 ORTHO05D000004 1.3e-06 57.0 59 45.8
Oeu007456.1 Olea europaea HOM05D000003 ORTHO05D000006 1.3e-06 57.0 59 52.5
QL05p062582 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 57.0 59 52.5
QL09p047247 Quercus lobata HOM05D000003 ORTHO05D001231 1.3e-06 57.0 59 52.5
Sopen09g001430 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-06 57.0 64 48.4
Atru.chr6.307 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 56.6 59 50.8
CSS0028435 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-06 56.6 57 56.1
PSO782G0247 Papaver somniferum HOM05D000003 ORTHO05D000004 1.7e-06 56.6 65 49.2
GSVIVG01003757001 Vitis vinifera HOM05D000554 ORTHO05D000860 1.7e-06 56.6 50 58.0
Zm00001eb425570 Zea mays HOM05D000554 ORTHO05D000860 1.7e-06 56.6 56 53.6
Aqoxy1G02814 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-06 56.2 65 49.2
Aqoxy2G01414 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-06 56.2 67 47.8
CBR_g37941 Chara braunii HOM05D007864 ORTHO05D000004 2.2e-06 56.2 59 47.5
CBR_g59558 Chara braunii HOM05D007864 ORTHO05D010128 2.2e-06 56.2 59 47.5
PSO063G7011 Papaver somniferum HOM05D000003 ORTHO05D000004 2.2e-06 56.2 65 44.6
PSO151G0217 Papaver somniferum HOM05D000003 ORTHO05D000004 2.2e-06 56.2 66 45.5
PSO170G0097 Papaver somniferum HOM05D000003 ORTHO05D000004 2.2e-06 56.2 49 57.1
SHI26093 Sapria himalayana HOM05D000003 ORTHO05D000004 2.2e-06 56.2 49 55.1
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.2e-06 56.2 59 50.8
Atru.chr3.1794 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-06 55.8 95 40.0
Actinidia03246 Actinidia chinensis HOM05D000554 ORTHO05D000860 2.9e-06 55.8 56 57.1
Aqoxy7G02192 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.9e-06 55.8 67 41.8
CSS0030187 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.9e-06 55.8 42 64.3
CBR_g55362 Chara braunii HOM05D000003 ORTHO05D000004 2.9e-06 55.8 59 49.2
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 2.9e-06 55.8 59 47.5
PGSC0003DMG400014363 Solanum tuberosum HOM05D000003 ORTHO05D000004 2.9e-06 55.8 60 53.3
Atru.chr6.1404 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-06 55.5 59 49.2
Aqoxy1G03403 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.5 65 44.6
Aqoxy1G03439 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.5 65 46.2
Aqoxy3G01491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.5 65 46.2
Aqoxy4G00279 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.5 63 46.0
Aqoxy7G01438 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.5 69 42.0
Aqoxy7G02447 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.5 65 44.6
CBR_g32157 Chara braunii HOM05D000003 ORTHO05D000004 3.8e-06 55.5 59 44.1
MBI17_g20226_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.8e-06 55.5 51 49.0
PSO675G7936 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-06 55.5 59 49.2
Aqoxy1G02818 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.9e-06 55.1 65 49.2
Aqoxy2G01405 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.9e-06 55.1 67 47.8
Aqoxy4G00920 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.9e-06 55.1 63 42.9
Aqoxy4G01302 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.9e-06 55.1 62 45.2
CSS0020651 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-06 55.1 47 61.7
CBR_g897 Chara braunii HOM05D007864 ORTHO05D000004 4.9e-06 55.1 59 45.8
PSO210G5738 Papaver somniferum HOM05D000003 ORTHO05D000004 4.9e-06 55.1 67 47.8
QL08p057946 Quercus lobata HOM05D000269 ORTHO05D005780 4.9e-06 55.1 59 52.5
Sopen08g016730 Solanum pennellii HOM05D000003 ORTHO05D012390 4.9e-06 55.1 63 41.3
Atru.chr1.2846 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-06 54.7 60 51.7
Atru.chr6.408 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-06 54.7 59 45.8
Atru.chr7.1397 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-06 54.7 59 47.5
Aqoxy2G00310 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.5e-06 54.7 65 44.6
Aqoxy2G01936 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.5e-06 54.7 65 41.5
Aqoxy6G01940 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.5e-06 54.7 69 37.7
PSO339G1835 Papaver somniferum HOM05D000003 ORTHO05D000004 6.5e-06 54.7 67 46.3
QL09p018207 Quercus lobata HOM05D000003 ORTHO05D000004 6.5e-06 54.7 45 60.0
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 6.5e-06 54.7 70 38.6
Hund21928 Selenicereus undatus HOM05D000554 ORTHO05D000860 6.5e-06 54.7 56 57.1
Solyc06g073340.3 Solanum lycopersicum HOM05D000554 ORTHO05D000860 6.5e-06 54.7 56 51.8
Sopen06g029720 Solanum pennellii HOM05D000554 ORTHO05D000860 6.5e-06 54.7 56 51.8
Hma1.2p1_0324F.1_g125310 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 8.4e-06 54.3 66 56.1
MBI01_g32843_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 8.4e-06 54.3 49 49.0
PSO732G0428 Papaver somniferum HOM05D000003 ORTHO05D000004 8.4e-06 54.3 89 38.2


User provided reference genes

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