Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010366 Camellia sinensis var. sinensis HOM05D038286 ORTHO05D020254 1.9e-26 121.7 61 100.0
CSS0039905 Camellia sinensis var. sinensis HOM05D038286 ORTHO05D020254 1.9e-26 121.7 61 100.0
CSS0021461 Camellia sinensis var. sinensis HOM05D038286 ORTHO05D020254 7.2e-13 76.6 61 70.5
CSS0043007 Camellia sinensis var. sinensis HOM05D001545 ORTHO05D001600 8.8e-11 69.7 47 78.7
MD12G1201700 Malus domestica HOM05D001545 ORTHO05D001600 5.3e-08 60.5 42 73.8
TWI75G0136 Tripterygium wilfordii HOM05D001545 ORTHO05D001600 1.5e-07 58.9 37 78.4
QL11p000130 Quercus lobata HOM05D001545 ORTHO05D001600 2.0e-07 58.5 37 75.7
HanXRQChr01g0005691 Helianthus annuus HOM05D001545 ORTHO05D001600 2.6e-07 58.2 34 82.4
TWI79G1712 Tripterygium wilfordii HOM05D001545 ORTHO05D001600 3.4e-07 57.8 37 75.7
GSVIVG01014261001 Vitis vinifera HOM05D001545 ORTHO05D001600 4.5e-07 57.4 34 79.4
Ciclev10007324m.g Citrus clementina HOM05D001545 ORTHO05D001600 7.7e-07 56.6 42 69.0
vmacro14886 Vaccinium macrocarpon HOM05D001545 ORTHO05D001600 7.7e-07 56.6 34 76.5
Actinidia24925 Actinidia chinensis HOM05D001545 ORTHO05D001600 1.0e-06 56.2 47 63.8
DCAR_002698 Daucus carota HOM05D001545 ORTHO05D001600 1.0e-06 56.2 34 76.5
Dinv07558 Davidia involucrata HOM05D001545 ORTHO05D001600 1.0e-06 56.2 34 76.5
Prupe.6G306800 Prunus persica HOM05D001545 ORTHO05D001600 1.0e-06 56.2 42 69.0
THA.LOC104818954 Tarenaya hassleriana HOM05D001545 ORTHO05D001600 1.3e-06 55.8 37 64.9
FAN02G3334 Fragaria x ananassa HOM05D001545 ORTHO05D001600 1.7e-06 55.5 42 66.7
Rhsim13G0029400 Rhododendron simsii HOM05D001545 ORTHO05D001600 1.7e-06 55.5 34 73.5
MSTRG.18271 Avicennia marina HOM05D001545 ORTHO05D001600 2.2e-06 55.1 34 70.6
Cfa006741 Carpinus fangiana HOM05D001545 ORTHO05D001600 2.2e-06 55.1 37 70.3
AUR62031536 Chenopodium quinoa HOM05D001545 ORTHO05D001600 2.2e-06 55.1 34 70.6
Ca_09281_v3 Cicer arietinum L. HOM05D001545 ORTHO05D001600 2.2e-06 55.1 42 64.3
Haze_04016 Corylus avellana HOM05D001545 ORTHO05D001600 2.2e-06 55.1 37 70.3
Eucgr.D00483 Eucalyptus grandis HOM05D001545 ORTHO05D001600 2.2e-06 55.1 42 64.3
PGR031G1330 Punica granatum HOM05D001545 ORTHO05D001600 2.2e-06 55.1 43 55.8
EL10Ac2g04197 Beta vulgaris HOM05D001545 ORTHO05D001600 2.9e-06 54.7 34 73.5
CSS0020759 Camellia sinensis var. sinensis HOM05D001545 ORTHO05D001600 2.9e-06 54.7 34 70.6
FAN05G4742 Fragaria x ananassa HOM05D001545 ORTHO05D001600 2.9e-06 54.7 42 66.7
FAN09G4170 Fragaria x ananassa HOM05D001545 ORTHO05D001600 2.9e-06 54.7 42 66.7
MD04G1188900 Malus domestica HOM05D001545 ORTHO05D001600 2.9e-06 54.7 42 66.7
Potri.008G049700 Populus trichocarpa HOM05D001545 ORTHO05D001600 2.9e-06 54.7 34 73.5
RcHm_v2.0_Chr3g0458141 Rosa chinensis HOM05D001545 ORTHO05D001600 2.9e-06 54.7 42 66.7
Sc02g0001200 Simmondsia chinensis HOM05D001545 ORTHO05D001600 2.9e-06 54.7 34 73.5
Atru.chr2.3606 Acer truncatum HOM05D001545 ORTHO05D001600 3.8e-06 54.3 37 64.9
CiPaw.08G152500 Carya illinoinensis HOM05D001545 ORTHO05D001600 3.8e-06 54.3 42 61.9
Migut.D00353 Erythranthe guttata HOM05D001545 ORTHO05D001600 3.8e-06 54.3 47 59.6
Gohir.A11G277500 Gossypium hirsutum HOM05D001545 ORTHO05D001600 3.8e-06 54.3 37 73.0
Gorai.007G311200 Gossypium raimondii HOM05D001545 ORTHO05D001600 3.8e-06 54.3 37 73.0
Medtr7g111710 Medicago truncatula HOM05D001545 ORTHO05D001600 3.8e-06 54.3 37 67.6
Nitab4.5_0000855g0200 Nicotiana tabacum HOM05D001545 ORTHO05D001600 3.8e-06 54.3 47 63.8
Potri.010G211100 Populus trichocarpa HOM05D001545 ORTHO05D001600 3.8e-06 54.3 37 70.3
Rhsim01G0271700 Rhododendron simsii HOM05D001545 ORTHO05D001600 3.8e-06 54.3 34 70.6
Sabra10G0163300 Salix brachista HOM05D001545 ORTHO05D001600 3.8e-06 54.3 37 70.3
Ah.16g104550 Amaranthus hybridus HOM05D001545 ORTHO05D001600 5.0e-06 53.9 34 70.6
Cpa.g.sc25.38 Carica papaya HOM05D001545 ORTHO05D001600 5.0e-06 53.9 37 73.0
DCAR_019429 Daucus carota HOM05D001545 ORTHO05D001600 5.0e-06 53.9 34 73.5
Lj6A295T8 Lonicera japonica HOM05D001545 ORTHO05D001600 5.0e-06 53.9 34 73.5
Rhsim13G0029500 Rhododendron simsii HOM05D001545 ORTHO05D001600 5.0e-06 53.9 34 73.5
FvH4_6g08220 Fragaria vesca HOM05D001545 ORTHO05D001600 6.5e-06 53.5 40 67.5
FAN14G3047 Fragaria x ananassa HOM05D001545 ORTHO05D001600 6.5e-06 53.5 40 67.5
Gohir.D01G073800 Gossypium hirsutum HOM05D001545 ORTHO05D001600 6.5e-06 53.5 37 73.0
Gorai.002G096700 Gossypium raimondii HOM05D001545 ORTHO05D001600 6.5e-06 53.5 37 73.0
Lalb_Chr15g0077731 Lupinus albus HOM05D001545 ORTHO05D001600 6.5e-06 53.5 42 64.3
Psat0s3087g0080 Pisum sativum HOM05D001545 ORTHO05D001600 6.5e-06 53.5 42 61.9
THA.LOC104802675 Tarenaya hassleriana HOM05D001545 ORTHO05D001600 6.5e-06 53.5 37 64.9
TAR636G0666 Trochodendron aralioides HOM05D001545 ORTHO05D001600 6.5e-06 53.5 40 67.5
CANSAT64G0229 Cannabis sativa HOM05D001545 ORTHO05D001600 8.5e-06 53.1 37 70.3
Migut.N02176 Erythranthe guttata HOM05D001545 ORTHO05D020254 8.5e-06 53.1 43 62.8
Peaxi162Scf00981g00314 Petunia axillaris HOM05D001545 ORTHO05D001600 8.5e-06 53.1 47 61.7


User provided reference genes

Program Settings