Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010351 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.0e-42 175.3 81 100.0
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 3.0e-27 124.8 69 84.1
CSS0038447 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 9.8e-26 119.8 77 75.3
CSS0015759 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 1.7e-25 119.0 77 75.3
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 3.6e-20 101.3 59 79.7
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 1.4e-19 99.4 62 77.4
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 2.3e-19 98.6 63 71.4
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 3.1e-19 98.2 74 64.9
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 8.9e-19 96.7 62 67.7
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 1.2e-18 96.3 73 67.1
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.0e-18 95.5 63 66.7
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 2.0e-18 95.5 63 69.8
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 2.6e-18 95.1 63 71.4
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 2.6e-18 95.1 62 69.4
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 2.6e-18 95.1 62 69.4
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 4.4e-18 94.4 62 71.0
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 4.4e-18 94.4 62 71.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 4.4e-18 94.4 62 71.0
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 5.8e-18 94.0 63 66.7
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 7.5e-18 93.6 63 65.1
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 9.8e-18 93.2 63 66.7
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 9.8e-18 93.2 63 65.1
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 1.7e-17 92.4 63 65.1
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 2.2e-17 92.0 63 66.7
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 2.9e-17 91.7 63 65.1
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 3.7e-17 91.3 63 65.1
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 4.9e-17 90.9 59 69.5
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 6.4e-17 90.5 63 66.7
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 6.4e-17 90.5 63 66.7
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 8.3e-17 90.1 62 62.9
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 1.4e-16 89.4 62 61.3
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 1.4e-16 89.4 62 61.3
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 1.9e-16 89.0 63 63.5
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 1.9e-16 89.0 81 55.6
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 2.4e-16 88.6 69 58.0
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 2.4e-16 88.6 63 60.3
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 3.2e-16 88.2 63 66.7
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 3.2e-16 88.2 62 66.1
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 3.2e-16 88.2 69 56.5
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 5.4e-16 87.4 63 66.7
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 7.0e-16 87.0 62 64.5
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 9.2e-16 86.7 64 62.5
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 1.2e-15 86.3 62 64.5
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 1.2e-15 86.3 63 63.5
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 1.2e-15 86.3 63 58.7
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 1.2e-15 86.3 63 61.9
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.2e-15 86.3 63 65.1
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 1.6e-15 85.9 63 60.3
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 2.0e-15 85.5 63 61.9
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 3.5e-15 84.7 63 61.9
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 4.6e-15 84.3 63 66.7
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 4.6e-15 84.3 62 61.3
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 4.6e-15 84.3 63 61.9
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 7.8e-15 83.6 58 63.8
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 7.8e-15 83.6 63 60.3
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 7.8e-15 83.6 64 60.9
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 1.3e-14 82.8 55 67.3
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 1.3e-14 82.8 62 62.9
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.3e-14 82.8 59 66.1
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.3e-14 82.8 59 64.4
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 1.3e-14 82.8 63 61.9
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.3e-14 82.8 59 66.1
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.7e-14 82.4 63 58.7
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.7e-14 82.4 63 58.7
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.7e-14 82.4 63 60.3
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 2.3e-14 82.0 63 61.9
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 3.0e-14 81.6 63 58.7
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 3.9e-14 81.3 63 55.6
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 3.9e-14 81.3 62 58.1
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 5.0e-14 80.9 63 55.6
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 5.0e-14 80.9 59 62.7
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 5.0e-14 80.9 59 62.7
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 6.6e-14 80.5 62 59.7
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.5e-13 79.3 59 62.7
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 1.5e-13 79.3 63 55.6
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 1.2e-12 76.3 63 58.7
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 1.2e-12 76.3 63 58.7
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 2.1e-12 75.5 59 62.7
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 6.2e-12 73.9 63 54.0
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 8.1e-12 73.6 65 60.0
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 1.4e-11 72.8 55 61.8
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 1.8e-11 72.4 59 57.6
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 4.0e-11 71.2 66 53.0
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 5.2e-11 70.9 49 63.3
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 6.8e-11 70.5 59 61.0
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 1.2e-10 69.7 61 55.7
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 1.2e-10 69.7 63 49.2
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 1.5e-10 69.3 60 55.0
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.4e-10 67.8 66 51.5
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 7.5e-10 67.0 39 74.4
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 7.5e-10 67.0 39 74.4
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 7.5e-10 67.0 44 59.1
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 1.7e-09 65.9 60 53.3
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 2.2e-09 65.5 61 52.5
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 2.2e-09 65.5 61 52.5
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 3.7e-09 64.7 61 52.5
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 3.7e-09 64.7 72 50.0
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 4.9e-09 64.3 51 52.9
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 4.9e-09 64.3 60 51.7
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 1.9e-08 62.4 60 50.0
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 1.9e-08 62.4 61 49.2
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 1.9e-08 62.4 61 49.2
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 1.9e-08 62.4 60 50.0
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 2.4e-08 62.0 64 43.8
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 2.4e-08 62.0 49 57.1
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 3.2e-08 61.6 61 50.8
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 3.2e-08 61.6 61 50.8
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 3.2e-08 61.6 61 50.8
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 3.2e-08 61.6 61 50.8
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 3.2e-08 61.6 41 63.4
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 5.4e-08 60.8 38 65.8
HPP92_010393 Vanilla planifolia HOM05D000344 ORTHO05D014129 5.4e-08 60.8 65 50.8
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.6e-07 59.3 50 56.0
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 2.7e-07 58.5 43 67.4
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 2.7e-07 58.5 60 45.0
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 3.5e-07 58.2 64 46.9
Hma1.2p1_0028F.1_g017540 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 6.0e-07 57.4 44 61.4
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 1.0e-06 56.6 57 50.9
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 3.0e-06 55.1 43 51.2
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 5.1e-06 54.3 62 50.0
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 6.6e-06 53.9 44 50.0


User provided reference genes

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