Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 6.1e-48 193.7 93 100.0
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.9e-33 145.6 97 78.4
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 4.0e-31 137.9 96 74.0
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-29 132.5 99 65.7
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.2e-29 132.1 99 65.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.2e-29 132.1 97 72.2
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 3.7e-29 131.3 97 69.1
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 6.4e-29 130.6 93 69.9
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 8.3e-29 130.2 97 68.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 8.3e-29 130.2 78 75.6
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 8.3e-29 130.2 78 75.6
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 8.3e-29 130.2 74 82.4
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.1e-28 129.8 73 82.2
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.1e-28 129.8 88 72.7
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.1e-28 129.8 99 66.7
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.2e-28 128.3 73 80.8
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 7.1e-28 127.1 99 62.6
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.2e-28 126.7 99 62.6
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.6e-27 125.9 87 70.1
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.6e-27 125.9 93 69.9
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 3.5e-27 124.8 74 79.7
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.6e-27 124.4 91 70.3
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.6e-27 124.4 80 72.5
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 4.6e-27 124.4 97 66.0
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 6.0e-27 124.0 95 66.3
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 7.8e-27 123.6 90 72.2
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 1.3e-26 122.9 95 62.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.3e-26 122.9 92 66.3
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 1.3e-26 122.9 91 65.9
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.3e-26 122.9 95 62.1
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.3e-26 122.9 97 62.9
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.7e-26 122.5 85 74.1
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.0e-26 121.7 73 74.0
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 3.0e-26 121.7 93 64.5
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.9e-26 121.3 74 73.0
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.1e-26 120.9 74 74.3
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 6.6e-26 120.6 89 65.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 6.6e-26 120.6 93 63.4
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 6.6e-26 120.6 79 72.2
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 6.6e-26 120.6 95 63.2
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.1e-25 119.8 74 74.3
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.5e-25 119.4 92 62.0
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.5e-25 119.4 93 62.4
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.5e-25 119.4 91 62.6
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.9e-25 119.0 92 65.2
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.5e-25 118.6 72 79.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-25 118.2 93 61.3
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 4.3e-25 117.9 89 64.0
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 5.6e-25 117.5 74 70.3
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.6e-25 117.5 93 61.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 7.3e-25 117.1 97 62.9
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 7.3e-25 117.1 74 70.3
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 7.3e-25 117.1 88 61.4
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 7.3e-25 117.1 88 61.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.3e-25 117.1 93 61.3
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 9.5e-25 116.7 95 58.9
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-24 116.3 74 68.9
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.2e-24 116.3 98 63.3
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.6e-24 115.9 87 64.4
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.6e-24 115.9 91 62.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.1e-24 115.5 82 63.4
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.8e-24 115.2 87 64.4
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 3.6e-24 114.8 74 70.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 3.6e-24 114.8 87 63.2
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 3.6e-24 114.8 92 64.1
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.7e-24 114.4 74 68.9
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 6.2e-24 114.0 92 58.7
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 6.2e-24 114.0 92 58.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.1e-23 113.2 74 68.9
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-23 113.2 96 58.3
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.1e-23 113.2 98 61.2
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.4e-23 112.8 74 68.9
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.4e-23 112.8 91 63.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.8e-23 112.5 83 62.7
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.3e-23 112.1 74 67.6
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.3e-23 112.1 74 68.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 4.0e-23 111.3 82 65.9
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 6.8e-23 110.5 93 61.3
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 6.8e-23 110.5 93 61.3
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 6.8e-23 110.5 74 70.3
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 8.9e-23 110.2 95 61.1
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.5e-22 109.4 74 68.9
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.5e-22 109.4 85 63.5
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 2.0e-22 109.0 74 67.6
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.6e-22 108.6 74 67.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 3.4e-22 108.2 74 70.3
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 4.4e-22 107.8 110 52.7
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.8e-22 107.5 95 62.1
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 5.8e-22 107.5 74 67.6
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 7.6e-22 107.1 80 66.2
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 9.9e-22 106.7 98 58.2
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 9.9e-22 106.7 81 64.2
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 9.9e-22 106.7 65 73.8
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.3e-21 106.3 94 59.6
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.3e-21 106.3 78 64.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.3e-21 106.3 61 78.7
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.7e-21 105.9 65 72.3
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 2.2e-21 105.5 98 58.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 2.2e-21 105.5 98 58.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.9e-21 105.1 89 55.1
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 2.9e-21 105.1 73 67.1
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.9e-21 105.1 64 73.4
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 4.9e-21 104.4 73 64.4
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 4.9e-21 104.4 62 77.4
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 4.9e-21 104.4 77 62.3
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 4.9e-21 104.4 74 66.2
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.4e-21 104.0 68 70.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 6.4e-21 104.0 68 70.6
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 8.4e-21 103.6 79 62.0
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.1e-20 103.2 74 64.9
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.4e-20 102.8 74 64.9
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.4e-20 102.8 77 61.0
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.2e-20 101.7 74 62.2
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.1e-20 101.3 57 78.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 5.4e-20 100.9 75 66.7
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 5.4e-20 100.9 75 66.7
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 7.1e-20 100.5 70 68.6
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 7.1e-20 100.5 104 52.9
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 7.1e-20 100.5 82 62.2
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 9.2e-20 100.1 62 74.2
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 9.2e-20 100.1 62 74.2
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 9.2e-20 100.1 75 65.3
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 9.2e-20 100.1 74 63.5
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-19 99.8 62 74.2
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-19 99.8 62 74.2
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-19 99.8 68 67.6
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.2e-19 99.8 57 77.2
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-19 99.4 62 74.2
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.6e-19 99.4 62 72.6
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.1e-19 99.0 89 55.1
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.1e-19 99.0 67 68.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 3.5e-19 98.2 74 59.5
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.7e-18 95.9 68 64.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.9e-17 92.4 53 77.4
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.9e-17 92.4 92 51.1
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 4.3e-17 91.3 89 51.7
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.3e-17 91.3 53 75.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-16 89.4 53 73.6
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.4e-15 85.5 79 54.4
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.1e-15 85.1 53 71.7
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 4.0e-15 84.7 71 56.3
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.0e-15 84.7 73 56.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 5.2e-15 84.3 56 64.3
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 6.8e-15 84.0 77 53.2
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 6.8e-15 84.0 77 53.2
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-14 82.8 56 66.1
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.6e-14 80.5 59 62.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.9e-13 78.6 58 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.4e-13 77.4 58 58.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.2e-12 74.7 54 59.3
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 6.6e-10 67.4 106 38.7
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.1e-09 66.6 76 44.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.6e-08 62.8 54 48.1
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.8e-07 59.3 59 45.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.6e-06 55.5 44 61.4


User provided reference genes

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