Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1669.8 838 100.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1640.2 838 98.0
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1488.0 831 88.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1465.3 915 81.9
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1459.9 827 88.4
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1441.0 838 85.8
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1439.9 838 85.1
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1432.5 967 76.5
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1429.5 838 84.0
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1419.1 838 83.1
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1418.7 838 83.3
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1414.8 837 83.8
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1412.9 838 83.3
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1411.7 838 83.8
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1405.2 838 83.1
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1404.8 838 82.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1404.8 838 83.2
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1402.1 838 82.2
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1401.3 868 81.5
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1401.3 858 81.8
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1401.3 838 82.9
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1399.0 838 82.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1394.8 838 81.6
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1393.6 838 81.9
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1391.7 838 82.1
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1391.7 838 83.1
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1387.9 838 81.7
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1386.3 858 81.2
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1386.3 838 82.1
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1385.9 838 82.2
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1384.4 840 82.0
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1381.3 838 82.3
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1381.3 838 82.3
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1380.5 842 81.2
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1377.8 840 82.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1376.3 838 81.4
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1375.1 838 81.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1369.4 838 81.0
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1360.5 841 79.7
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1360.5 845 79.8
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1360.1 870 79.0
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 838 79.7
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1352.8 838 79.4
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1350.9 839 80.1
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 911 75.0
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1349.3 839 80.8
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 839 79.7
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1345.9 838 79.6
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 79.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 79.4
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 840 80.1
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 839 79.9
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 839 79.4
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 838 78.8
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1329.7 827 80.0
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1328.2 838 77.8
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1327.0 838 78.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1327.0 838 80.0
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 843 77.5
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 838 77.9
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 838 77.7
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 838 77.7
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1321.6 839 78.5
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 839 77.6
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 838 79.0
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 904 74.7
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 838 77.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 839 78.8
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 839 77.4
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1313.9 867 76.7
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 838 77.2
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 839 77.5
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 850 78.1
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 840 78.0
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 838 76.7
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 845 76.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 845 76.7
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1305.4 911 73.4
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 765 83.8
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1303.5 845 76.6
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1295.0 781 81.6
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1291.2 764 82.9
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1286.2 838 76.3
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1253.4 842 75.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1252.7 751 82.6
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1251.5 823 76.1
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1241.5 817 76.5
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1228.0 775 79.1
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1223.4 842 75.1
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1221.8 838 74.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1218.0 767 78.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1206.8 839 74.0
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1197.2 794 75.7
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1188.7 839 69.8
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1173.7 858 67.7
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1173.3 838 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1163.3 823 70.7
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1148.7 691 82.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1140.9 852 67.1
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1138.6 846 67.1
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1129.8 748 74.5
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1115.1 839 68.1
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1105.9 696 78.6
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.2e-311 1070.8 858 64.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.9e-310 1068.9 839 63.9
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.4e-308 1062.0 654 80.0
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.5e-291 1004.6 845 64.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 6.8e-255 884.4 642 71.7
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 8.9e-239 830.9 542 75.3
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.9e-228 796.6 513 76.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 5.1e-210 735.3 418 86.4
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.1e-155 553.9 329 82.4
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 6.2e-123 446.0 300 77.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.6e-117 426.0 307 67.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 8.9e-114 415.6 285 72.3
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.3e-112 411.8 254 80.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.3e-96 358.6 194 90.2
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 3.1e-90 337.4 389 50.6
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.9e-88 330.1 273 63.0
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-68 265.8 275 55.3
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 4.8e-67 260.4 182 72.5
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.6e-52 211.5 139 75.5
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.2e-47 194.5 140 70.0
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.2e-44 186.0 117 79.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.4e-36 157.9 94 83.0
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 5.0e-32 144.1 82 82.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 5.6e-31 140.6 133 55.6
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.2e-30 139.4 82 85.4
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 9.2e-26 123.2 103 62.1
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.5e-25 121.3 76 76.3
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 5.9e-25 120.6 73 83.6
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 3.6e-22 111.3 84 67.9
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 8.0e-22 110.2 67 83.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.0e-21 109.8 68 76.5
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 9.5e-15 86.7 105 53.3
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 4.4e-12 77.8 52 73.1
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.2e-10 71.6 42 88.1
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 2.5e-07 62.0 41 75.6
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 4.3e-07 61.2 79 41.8
Lsat_1_v5_gn_5_73601 Lactuca sativa HOM05D000051 ORTHO05D000015 6.2e-06 57.4 51 54.9


User provided reference genes

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