Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.5e-261 905.6 442 100.0
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 6.2e-207 724.2 442 79.4
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 3.2e-195 685.3 432 77.5
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 3.3e-168 595.5 443 65.9
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 3.3e-168 595.5 442 67.4
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 6.9e-166 587.8 442 64.7
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 2.0e-165 586.3 443 65.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 5.0e-164 581.6 443 63.4
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.4e-153 547.0 442 62.2
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 6.7e-153 544.7 446 62.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 9.7e-152 540.8 442 61.3
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.2e-151 539.7 442 61.8
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 2.8e-151 539.3 445 63.6
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.1e-150 535.4 449 62.1
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 4.1e-150 535.4 451 61.9
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 4.1e-150 535.4 437 64.3
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.5e-149 532.3 450 61.3
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 5.0e-148 528.5 450 61.6
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 6.5e-148 528.1 334 76.3
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 2.5e-147 526.2 447 60.2
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 5.2e-145 518.5 433 58.9
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 5.2e-145 518.5 355 73.0
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.5e-144 516.9 420 65.0
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 4.8e-143 511.9 335 74.0
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 6.3e-143 511.5 425 61.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 8.3e-143 511.1 422 60.9
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 8.3e-143 511.1 443 59.6
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 5.5e-139 498.4 337 72.1
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 5.7e-136 488.4 337 72.7
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.3e-135 487.3 335 71.3
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 6.3e-135 485.0 442 57.9
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 3.1e-134 482.6 356 64.9
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 3.1e-134 482.6 356 64.9
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.2e-133 480.7 354 64.4
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 2.0e-133 479.9 338 69.5
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 3.5e-133 479.2 331 68.6
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.5e-133 478.8 450 55.6
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 4.5e-133 478.8 365 63.6
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 5.9e-133 478.4 357 64.4
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 5.9e-133 478.4 357 64.4
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 7.7e-133 478.0 349 65.6
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 1.0e-132 477.6 331 68.3
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.0e-132 477.6 346 65.0
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.3e-132 477.2 357 64.4
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 4.2e-131 472.2 324 68.8
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 7.2e-131 471.5 341 67.4
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 7.2e-131 471.5 390 61.0
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 9.5e-131 471.1 336 69.3
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 1.2e-130 470.7 342 65.5
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.1e-130 469.9 448 55.6
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 3.6e-130 469.2 372 63.7
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 6.1e-130 468.4 342 69.6
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.0e-129 467.6 328 68.9
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 3.0e-129 466.1 359 64.1
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 4.0e-129 465.7 334 68.3
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 5.2e-129 465.3 385 60.0
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 8.9e-129 464.5 346 66.8
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.2e-128 464.2 377 63.7
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.0e-128 463.4 345 66.7
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.2e-127 459.9 340 66.2
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.1e-126 457.6 335 66.6
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-126 457.6 338 66.0
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.8e-126 456.8 336 65.8
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 4.1e-126 455.7 336 66.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 9.2e-126 454.5 343 65.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.5e-125 452.2 336 65.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 7.8e-125 451.4 336 67.0
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.0e-124 448.7 333 65.5
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.0e-124 448.7 333 65.5
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 5.0e-124 448.7 346 64.2
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.2e-122 444.1 337 65.3
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-122 444.1 329 65.3
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 6.1e-122 441.8 345 64.3
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 5.2e-121 438.7 252 79.8
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 5.2e-121 438.7 444 52.3
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.5e-120 437.2 444 54.5
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.6e-120 436.4 246 82.1
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.4e-120 435.6 328 64.3
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.3e-119 434.1 322 66.1
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.9e-119 432.2 367 62.7
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 6.4e-119 431.8 334 62.0
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.4e-118 429.9 337 65.6
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.7e-117 426.4 328 64.0
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 7.8e-117 424.9 321 63.9
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.3e-111 407.5 441 51.0
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.2e-109 401.0 352 59.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.6e-106 389.4 439 51.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.6e-106 389.4 320 62.8
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.4e-105 387.5 328 59.8
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.3e-105 386.7 338 60.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 5.8e-104 382.1 398 53.3
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.9e-103 379.0 316 62.3
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 2.7e-101 373.2 324 57.1
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.8e-98 363.2 331 54.4
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 2.9e-95 353.2 192 82.3
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.2e-94 349.4 230 70.4
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 4.6e-93 345.9 268 63.8
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 7.3e-91 338.6 358 49.4
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 6.2e-90 335.5 193 83.9
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.9e-83 313.9 280 56.8
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 5.8e-80 302.4 273 54.2
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.5e-77 293.1 309 52.1
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 5.1e-76 289.3 318 45.0
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 4.3e-75 286.2 357 43.4
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 8.7e-68 261.9 196 61.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 7.4e-67 258.8 227 55.5
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.5e-64 251.1 318 48.4
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.1e-62 245.0 296 47.6
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 2.4e-57 227.3 118 80.5
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 5.3e-57 226.1 123 79.7
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.3e-52 210.7 198 56.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 4.1e-49 199.9 114 81.6
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 3.8e-47 193.4 112 81.2
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.1e-44 183.0 229 45.0
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.7e-43 179.5 298 39.6
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.2e-39 167.5 183 53.0
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.9e-38 164.5 274 38.3
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.0e-36 156.8 173 52.6
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 3.3e-35 153.7 340 31.8
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 9.7e-35 152.1 94 72.3
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 2.6e-32 144.1 233 40.3
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 5.2e-28 129.8 62 90.3
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.1e-25 120.6 98 64.3
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 4.1e-25 120.2 360 28.6
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.2e-24 118.6 202 40.6
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 2.7e-24 117.5 189 37.6
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.5e-22 111.7 73 71.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 4.7e-21 106.7 61 85.2
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.0e-20 105.5 55 74.5
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 4.0e-20 103.6 63 81.0
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 9.1e-17 92.4 78 59.0
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 3.5e-16 90.5 174 37.4
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 5.0e-15 86.7 211 33.2
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.2e-10 71.2 44 81.8
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 2.2e-10 71.2 109 37.6
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.6e-08 65.1 40 75.0


User provided reference genes

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