Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.3e-62 241.1 119 100.0
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 8.4e-26 120.6 103 63.1
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.8e-21 105.5 92 63.0
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.4e-20 103.2 104 57.7
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.8e-20 102.8 92 62.0
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 6.9e-20 100.9 80 63.8
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 2.6e-19 99.0 87 57.5
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.5e-17 92.4 79 57.0
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.4e-17 90.5 71 63.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.1e-16 89.4 93 52.7
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 6.7e-15 84.3 88 54.5
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 9.7e-14 80.5 90 47.8
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 2.8e-13 79.0 81 55.6
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.4e-12 76.6 80 52.5
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 1.8e-12 76.3 61 60.7
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.1e-12 75.1 89 47.2
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 6.9e-12 74.3 91 44.0
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 6.9e-12 74.3 98 44.9
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.2e-11 73.6 58 63.8
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 1.5e-11 73.2 59 67.8
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.9e-11 71.2 69 55.1
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.2e-10 69.3 92 45.7
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.8e-10 68.6 101 42.6
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 8.5e-10 67.4 82 47.6
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 8.5e-10 67.4 82 52.4
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 8.5e-10 67.4 81 49.4
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 8.5e-10 67.4 93 41.9
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 1.1e-09 67.0 118 41.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.4e-09 66.6 85 45.9
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.9e-09 66.2 106 39.6
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 1.9e-09 66.2 65 52.3
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.5e-09 65.9 84 44.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 3.2e-09 65.5 88 46.6
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 4.2e-09 65.1 53 62.3
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 4.2e-09 65.1 92 40.2
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 5.5e-09 64.7 81 45.7
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 5.5e-09 64.7 79 51.9
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 5.5e-09 64.7 96 41.7
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 5.5e-09 64.7 87 42.5
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 5.5e-09 64.7 53 56.6
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.2e-09 64.3 78 51.3
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.2e-09 64.3 78 47.4
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.2e-09 64.3 78 47.4
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 9.4e-09 63.9 70 51.4
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 9.4e-09 63.9 80 46.2
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 9.4e-09 63.9 92 39.1
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.6e-08 63.2 94 44.7
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.6e-08 63.2 94 44.7
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 1.6e-08 63.2 85 42.4
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.1e-08 62.8 78 46.2
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.7e-08 62.4 84 45.2
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 3.6e-08 62.0 45 60.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.6e-08 62.0 87 44.8
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 3.6e-08 62.0 96 41.7
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.7e-08 61.6 85 43.5
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 4.7e-08 61.6 54 59.3
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 6.1e-08 61.2 85 42.4
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 6.1e-08 61.2 64 51.6
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 7.9e-08 60.8 52 55.8
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 7.9e-08 60.8 86 43.0
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 7.9e-08 60.8 53 56.6
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 1.0e-07 60.5 83 41.0
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 1.0e-07 60.5 94 40.4
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.4e-07 60.1 65 55.4
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.4e-07 60.1 91 39.6
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.8e-07 59.7 87 42.5
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.3e-07 59.3 92 42.4
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 2.3e-07 59.3 99 39.4
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 2.3e-07 59.3 56 53.6
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 3.0e-07 58.9 89 42.7
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.9e-07 58.5 84 41.7
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 3.9e-07 58.5 91 41.8
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.9e-07 58.5 80 46.2
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 3.9e-07 58.5 80 46.2
Nitab4.5_0001229g0080 Nicotiana tabacum HOM05D006736 ORTHO05D008459 3.9e-07 58.5 51 60.8
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.9e-07 58.5 74 47.3
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 5.1e-07 58.2 75 44.0
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 6.7e-07 57.8 93 38.7
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 8.8e-07 57.4 64 51.6
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.1e-06 57.0 73 49.3
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.1e-06 57.0 56 55.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.1e-06 57.0 95 43.2
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.1e-06 57.0 47 61.7
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.1e-06 57.0 47 61.7
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.1e-06 57.0 70 47.1
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.5e-06 56.6 58 44.8
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 1.5e-06 56.6 52 59.6
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 1.5e-06 56.6 52 59.6
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.5e-06 56.6 52 59.6
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.5e-06 56.6 91 39.6
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.0e-06 56.2 91 39.6
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-06 55.8 90 40.0
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 2.6e-06 55.8 85 42.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.6e-06 55.8 85 42.4
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.6e-06 55.8 85 42.4
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.6e-06 55.8 85 42.4
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 3.3e-06 55.5 70 44.3
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 3.3e-06 55.5 41 61.0
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.3e-06 55.5 60 48.3
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 3.3e-06 55.5 99 36.4
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 4.4e-06 55.1 34 67.6
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 4.4e-06 55.1 62 45.2
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 5.7e-06 54.7 62 50.0
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 5.7e-06 54.7 93 43.0
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 5.7e-06 54.7 34 67.6
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 5.7e-06 54.7 94 39.4
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 5.7e-06 54.7 65 43.1
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 5.7e-06 54.7 59 49.2
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 7.4e-06 54.3 91 44.0
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 7.4e-06 54.3 59 47.5
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 7.4e-06 54.3 94 37.2
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 7.4e-06 54.3 47 57.4
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 9.7e-06 53.9 67 41.8


User provided reference genes

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