Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.9e-186 655.2 361 100.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.1e-184 649.0 361 98.3
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 7.7e-131 471.1 363 71.9
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 5.5e-129 464.9 304 77.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.6e-128 462.2 301 78.7
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 8.0e-128 461.1 292 78.8
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.8e-127 459.9 310 74.8
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 3.0e-127 459.1 311 77.8
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 3.0e-127 459.1 366 67.8
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 8.8e-127 457.6 363 67.5
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 8.8e-127 457.6 295 77.6
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.4e-126 455.7 365 66.8
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.4e-126 455.3 300 77.0
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.3e-125 453.8 296 77.4
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.7e-125 453.4 368 66.0
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.2e-125 453.0 312 75.3
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.7e-125 452.2 285 78.2
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.3e-125 451.4 314 73.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.8e-124 449.9 293 77.1
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.4e-124 449.5 304 75.3
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 7.0e-124 448.0 299 73.9
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 9.2e-124 447.6 317 74.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 7.7e-123 444.5 290 76.9
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 5.0e-122 441.8 288 77.8
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.5e-121 440.3 318 73.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.5e-121 439.5 372 63.7
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.6e-121 438.3 369 65.3
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 7.3e-121 438.0 290 75.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 9.5e-121 437.6 270 79.6
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 9.5e-121 437.6 309 72.2
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.2e-120 437.2 311 70.4
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.2e-120 437.2 303 74.6
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 4.7e-120 435.3 287 76.3
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 8.0e-120 434.5 374 64.2
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 8.0e-120 434.5 275 76.7
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.0e-119 434.1 280 75.7
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 3.0e-119 432.6 303 71.6
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.3e-117 427.2 294 73.1
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.6e-115 420.2 291 72.2
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.0e-115 419.9 299 71.2
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.7e-115 419.5 310 68.7
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 2.7e-115 419.5 315 67.6
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 3.5e-115 419.1 314 67.8
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 3.5e-115 419.1 310 68.7
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.3e-114 417.2 290 70.7
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.7e-114 416.8 383 59.5
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.3e-114 416.4 318 69.2
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.0e-114 416.0 294 70.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 5.0e-114 415.2 268 78.7
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.6e-114 414.8 303 68.3
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 2.5e-113 412.9 322 66.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 4.3e-113 412.1 315 66.3
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.8e-112 409.5 316 68.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 2.8e-112 409.5 303 68.3
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.6e-112 409.1 302 70.5
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 4.7e-112 408.7 294 69.4
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 4.7e-112 408.7 321 67.6
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 8.0e-112 407.9 319 66.8
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 8.0e-112 407.9 319 66.5
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 8.0e-112 407.9 319 66.8
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.8e-111 406.8 321 67.0
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.8e-111 406.8 303 71.0
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.8e-111 406.8 310 67.7
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 4.0e-111 405.6 316 68.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 4.0e-111 405.6 319 66.5
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-111 405.6 319 66.5
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 4.0e-111 405.6 319 66.5
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.5e-110 403.7 313 65.5
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.0e-110 403.3 321 67.3
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.8e-110 401.7 305 68.9
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 5.8e-110 401.7 295 68.8
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 9.8e-110 401.0 278 69.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.3e-109 400.6 276 73.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 8.3e-109 397.9 303 66.3
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.0e-106 389.4 312 64.1
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.1e-105 387.5 296 69.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 7.3e-105 384.8 315 62.2
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.1e-103 380.9 260 71.2
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 4.0e-103 379.0 250 70.0
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 7.5e-102 374.8 262 69.1
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.7e-101 373.6 265 71.3
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 7.1e-100 368.2 312 66.0
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 9.2e-100 367.9 317 61.5
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.7e-99 366.3 265 66.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 4.6e-99 365.5 293 64.2
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.7e-96 355.5 316 57.9
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-95 354.0 263 65.4
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.0e-94 350.1 267 64.8
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.0e-94 350.1 251 70.1
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 5.8e-94 348.6 271 63.8
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.6e-94 348.2 267 64.4
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.7e-93 347.1 260 66.9
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 2.9e-93 346.3 250 73.2
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.9e-93 346.3 267 64.4
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 8.4e-93 344.7 316 56.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-92 344.4 252 68.3
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 5.6e-89 332.0 249 67.5
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 5.6e-89 332.0 254 66.1
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 8.1e-88 328.2 257 68.5
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 8.1e-88 328.2 260 61.9
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-87 327.0 260 58.8
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-87 327.0 260 58.8
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.1e-87 326.2 225 69.3
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-85 320.1 266 57.9
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.9e-85 319.7 257 59.1
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 6.4e-85 318.5 266 57.5
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.4e-84 316.6 272 57.7
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 6.0e-83 312.0 257 58.4
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-82 309.7 268 55.2
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-82 309.7 268 55.2
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-82 308.9 264 55.3
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-82 308.9 264 55.3
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.1e-81 307.8 257 57.6
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 7.3e-81 305.1 265 55.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.6e-80 303.9 272 54.0
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.8e-80 303.1 273 55.3
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.8e-80 303.1 269 54.6
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.8e-79 300.4 269 54.3
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 3.1e-79 299.7 255 57.6
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 5.3e-79 298.9 269 53.9
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 9.0e-79 298.1 269 54.3
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.3e-77 294.3 267 54.7
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 3.8e-77 292.7 266 55.6
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.1e-75 287.0 250 58.0
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 7.9e-75 285.0 231 58.0
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 7.9e-75 285.0 280 55.7
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.9e-74 282.7 193 73.1
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.4e-71 273.5 176 75.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.9e-71 271.9 230 55.7
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.5e-68 262.3 258 51.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.1e-68 261.9 241 55.2
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-66 258.1 249 53.4
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.0e-66 258.1 169 72.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-66 256.1 264 50.0
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-66 255.8 264 50.0
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.5e-65 254.2 229 54.1
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 2.8e-64 250.0 196 63.8
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-60 237.7 403 39.0
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.2e-60 236.5 260 51.2
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.5e-57 226.9 228 53.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 6.9e-55 218.8 252 47.6
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.9e-52 210.7 179 55.3
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.5e-52 210.3 179 56.4
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.3e-50 203.8 121 80.2
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.3e-49 199.9 147 69.4
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.4e-47 193.7 166 55.4
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.9e-45 186.8 156 59.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 6.1e-43 179.1 228 47.8
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.4e-41 172.9 196 52.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 7.2e-36 155.6 233 38.6
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 8.8e-34 148.7 121 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 9.7e-33 145.2 224 42.4
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.0e-29 135.2 195 45.1
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 6.1e-27 125.9 244 33.6
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.7e-26 122.5 82 78.0
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-24 117.9 122 52.5
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.1e-23 112.1 110 50.0
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-20 103.6 65 76.9
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 3.2e-20 103.6 181 36.5
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 3.2e-20 103.6 87 58.6
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 9.4e-20 102.1 96 59.4
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.5e-17 92.4 225 29.3
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 7.5e-17 92.4 59 78.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-16 91.3 68 67.6
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.0e-14 84.3 66 59.1
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 4.5e-14 83.2 72 58.3
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.3e-13 81.6 43 88.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 8.6e-13 79.0 58 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 3.0e-10 70.5 269 27.1
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 2.6e-09 67.4 61 55.7
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.7e-09 66.2 63 54.0
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.3e-08 65.1 54 55.6


User provided reference genes

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