Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.6e-97 359.4 180 100.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.6e-84 314.7 179 88.3
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.9e-84 313.9 180 86.7
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.9e-82 309.3 180 86.1
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 9.6e-82 307.0 172 89.0
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 3.7e-81 305.1 180 83.3
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 4.8e-81 304.7 180 83.9
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 8.1e-81 303.9 172 88.4
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-80 303.5 180 85.6
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.8e-80 302.8 180 83.9
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.4e-80 302.4 180 82.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.0e-80 301.6 180 82.2
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.0e-80 301.6 180 82.2
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 5.3e-80 301.2 180 81.1
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 5.3e-80 301.2 180 83.9
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 9.0e-80 300.4 203 77.3
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 9.0e-80 300.4 179 83.8
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 9.0e-80 300.4 179 83.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 9.0e-80 300.4 180 83.9
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 9.0e-80 300.4 183 82.5
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-79 298.9 180 83.9
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.5e-79 298.1 180 82.2
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.8e-79 297.7 180 80.0
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 7.6e-79 297.4 180 82.2
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.7e-78 296.2 180 82.8
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.7e-78 296.2 180 82.2
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 2.2e-78 295.8 172 84.3
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.2e-78 295.8 180 81.1
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.9e-78 295.4 180 82.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.9e-78 295.4 180 82.8
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 3.8e-78 295.0 180 81.1
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 4.9e-78 294.7 182 80.8
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 6.5e-78 294.3 181 82.3
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 6.5e-78 294.3 180 80.6
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 8.4e-78 293.9 178 82.0
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 8.4e-78 293.9 172 86.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 8.4e-78 293.9 172 84.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.4e-77 293.1 180 79.4
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.9e-77 292.7 180 82.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.9e-77 292.7 178 80.9
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.9e-77 292.7 164 88.4
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 4.2e-77 291.6 178 80.9
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.2e-77 291.6 180 82.2
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.2e-76 290.0 180 80.0
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-76 288.5 145 100.0
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 4.6e-76 288.1 180 81.1
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 7.9e-76 287.3 157 91.1
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.0e-75 287.0 183 79.2
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 78.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.5e-74 283.1 183 78.7
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.5e-74 283.1 161 85.1
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.5e-74 283.1 161 85.7
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.9e-74 282.7 172 82.6
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.3e-74 282.0 184 76.6
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.3e-74 282.0 184 77.7
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 4.3e-74 281.6 159 85.5
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 5.7e-74 281.2 180 78.9
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 5.7e-74 281.2 173 79.8
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 5.7e-74 281.2 161 83.9
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 7.4e-74 280.8 179 77.1
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.3e-73 280.0 178 78.1
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.6e-73 279.6 180 77.8
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.6e-73 279.6 180 77.8
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.6e-73 279.6 180 76.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 4.8e-73 278.1 179 75.4
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.4e-72 276.6 189 73.5
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.8e-72 276.2 179 75.4
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.1e-72 275.0 178 78.7
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 6.9e-72 274.2 160 83.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.2e-71 273.5 172 79.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.2e-71 273.5 178 76.4
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.2e-71 273.5 164 82.3
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 2.0e-71 272.7 178 78.1
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.0e-71 272.7 159 83.0
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.6e-71 272.3 180 76.1
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 3.4e-71 271.9 160 81.9
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 4.5e-71 271.6 158 82.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 4.5e-71 271.6 158 82.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 4.5e-71 271.6 178 75.8
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 5.9e-71 271.2 185 74.6
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.9e-71 271.2 159 82.4
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 5.9e-71 271.2 160 81.9
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 7.6e-71 270.8 180 74.4
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.0e-70 270.4 180 74.4
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-70 269.2 180 76.7
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.2e-70 269.2 180 73.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 6.5e-70 267.7 159 80.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 6.5e-70 267.7 159 82.4
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 8.5e-70 267.3 159 81.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.4e-69 266.5 170 76.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.4e-69 266.5 145 90.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 2.5e-69 265.8 159 81.1
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.5e-69 265.8 159 81.1
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-69 265.8 176 75.0
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.2e-69 265.4 173 78.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.2e-68 263.5 180 72.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.6e-68 263.1 173 77.5
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.6e-68 263.1 162 78.4
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.6e-68 261.9 144 89.6
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 7.9e-68 260.8 179 73.7
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.9e-68 260.8 142 90.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.8e-67 259.6 171 76.0
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.3e-67 259.2 180 76.1
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 5.1e-67 258.1 178 72.5
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.3e-66 255.4 144 86.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 4.3e-66 255.0 137 91.2
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.3e-66 255.0 148 87.2
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 5.7e-66 254.6 145 84.8
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 7.4e-66 254.2 177 70.1
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.4e-64 250.0 140 85.0
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 4.5e-63 245.0 158 75.9
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.0e-62 243.8 137 89.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-62 243.4 176 70.5
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-61 240.4 176 70.5
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.5e-61 239.2 176 69.9
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 6.7e-59 231.1 155 73.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.3e-58 228.8 155 78.1
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.9e-55 218.0 165 67.9
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 3.8e-54 215.3 135 80.0
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 3.8e-54 215.3 156 64.7
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.3e-49 200.3 109 90.8
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.1e-48 195.7 167 55.1
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 5.3e-48 194.9 110 84.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.2e-47 193.7 117 84.6
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 2.0e-47 193.0 143 69.9
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 3.8e-46 188.7 117 77.8
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-42 176.4 130 70.8
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.0e-42 176.4 113 77.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.2e-39 167.2 152 54.6
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.1e-37 160.6 111 72.1
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 3.2e-37 159.1 100 76.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.6e-36 156.8 130 65.4
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.2e-35 151.8 77 93.5
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.2e-34 150.6 189 50.8
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.2e-33 146.4 119 64.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.8e-33 145.2 119 64.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.4e-32 143.7 155 54.2
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.3e-30 136.3 77 83.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.1e-29 134.0 93 72.0
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-29 134.0 77 85.7
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.5e-29 132.9 68 91.2
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.6e-28 129.0 86 76.7
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.1e-24 115.9 120 58.3
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 3.5e-23 112.5 64 87.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.6e-20 102.4 77 68.8
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 5.7e-18 95.1 52 86.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.1e-16 90.9 66 66.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 3.5e-15 85.9 58 72.4
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 4.6e-15 85.5 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.9e-06 55.8 33 78.8


User provided reference genes

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