Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 6.7e-239 830.5 485 100.0
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 8.3e-205 717.2 496 89.1
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.7e-165 586.6 504 71.6
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.4e-159 567.0 505 71.5
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.9e-140 503.4 503 65.8
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.8e-138 496.9 491 64.0
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.4e-135 487.3 542 60.9
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 3.4e-134 482.6 501 60.9
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 3.2e-132 476.1 476 63.9
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 4.2e-132 475.7 514 64.0
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 8.0e-131 471.5 490 66.9
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 2.3e-130 469.9 434 67.7
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.3e-128 464.2 434 66.4
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 3.7e-128 462.6 474 63.9
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.0e-126 456.8 429 69.0
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 1.0e-125 454.5 444 64.9
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.0e-125 454.5 458 65.3
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.2e-125 453.4 423 66.0
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 2.9e-125 453.0 424 70.5
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 6.5e-125 451.8 502 62.4
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 1.1e-124 451.1 430 64.7
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 1.9e-124 450.3 459 65.1
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.9e-124 450.3 484 60.3
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 4.2e-124 449.1 421 67.7
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 5.5e-124 448.7 494 60.9
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 7.2e-124 448.4 474 65.6
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 9.4e-124 448.0 496 62.5
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 2.1e-123 446.8 435 65.1
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 6.1e-123 445.3 381 72.7
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.0e-122 444.5 464 63.8
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 1.8e-122 443.7 485 61.2
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 4.0e-122 442.6 478 65.3
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 5.2e-122 442.2 455 63.7
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 2.6e-121 439.9 456 64.0
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 7.5e-121 438.3 457 61.7
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 9.7e-121 438.0 502 63.1
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 1.7e-120 437.2 431 61.5
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 1.7e-120 437.2 430 61.2
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 8.2e-120 434.9 446 59.9
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 1.1e-119 434.5 442 63.6
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 5.3e-119 432.2 434 65.9
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.2e-118 431.0 421 64.1
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.6e-118 430.6 418 67.9
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.6e-118 430.6 418 67.9
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 3.5e-118 429.5 498 61.4
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 4.5e-118 429.1 505 57.8
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 5.9e-118 428.7 442 64.0
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.3e-117 427.6 459 61.2
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 4.2e-116 422.5 421 65.3
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 9.4e-116 421.4 423 65.7
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.2e-113 414.5 455 64.2
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.5e-113 414.1 461 61.0
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 4.8e-112 409.1 419 64.7
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 6.3e-112 408.7 386 67.1
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 6.3e-112 408.7 432 63.2
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.8e-111 407.1 467 58.9
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.8e-111 407.1 465 60.6
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 4.1e-111 406.0 461 60.3
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 4.1e-111 406.0 458 60.3
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 9.1e-111 404.8 436 63.5
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 1.6e-110 404.1 423 62.9
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 2.7e-110 403.3 403 67.2
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 2.7e-110 403.3 406 66.7
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.0e-109 401.4 454 62.1
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 2.9e-109 399.8 419 60.6
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 3.8e-109 399.4 463 60.3
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-108 397.9 467 59.5
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 1.1e-108 397.9 423 61.7
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 1.9e-108 397.1 662 45.0
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 9.5e-108 394.8 458 59.2
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.2e-107 394.4 447 60.4
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 6.1e-107 392.1 432 61.1
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.8e-106 390.6 418 63.9
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 8.9e-106 388.3 444 62.4
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-105 387.5 423 61.9
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.4e-105 386.3 465 57.4
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 5.7e-105 385.6 481 57.6
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 5.7e-105 385.6 481 57.6
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 2.2e-104 383.6 428 58.9
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 1.4e-103 380.9 467 58.2
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 3.1e-103 379.8 496 56.9
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 9.2e-103 378.3 423 59.8
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.0e-102 377.1 494 55.3
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 3.8e-101 372.9 464 52.6
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 3.3e-100 369.8 423 60.3
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 6.8e-98 362.1 487 58.1
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 3.5e-94 349.7 384 60.7
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 3.3e-92 343.2 411 55.7
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.8e-90 337.4 368 60.9
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 4.0e-90 336.3 402 58.2
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 2.2e-88 330.5 451 52.8
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 2.2e-88 330.5 451 52.8
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 3.9e-85 319.7 457 49.9
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 2.8e-83 313.5 425 50.8
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.8e-82 310.8 369 58.8
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.0e-81 307.4 283 66.4
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 7.5e-81 305.4 286 67.5
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.7e-80 304.3 281 65.1
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 4.1e-79 299.7 637 41.6
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 2.7e-78 297.0 295 66.8
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 2.5e-76 290.4 326 59.2
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 5.2e-74 282.7 270 68.1
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 8.9e-74 282.0 493 46.2
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 5.8e-73 279.3 452 50.0
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 1.3e-72 278.1 296 61.5
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 6.4e-72 275.8 282 61.0
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.7e-70 270.4 341 52.5
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 2.8e-67 260.4 319 60.2
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 2.3e-61 240.7 250 67.6
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-60 238.4 191 68.1
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.3e-59 235.0 385 46.0
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.1e-58 231.9 320 55.9
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 3.8e-56 223.4 420 48.1
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 4.8e-51 206.5 354 49.7
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 4.5e-41 173.3 518 34.9
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 1.5e-36 158.3 103 82.5
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.7e-36 156.4 119 79.0
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 8.5e-32 142.5 361 32.1
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.1e-30 137.9 179 63.1
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 3.6e-30 137.1 87 82.8
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 3.6e-30 137.1 196 46.9
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 4.6e-30 136.7 157 54.8
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 1.0e-29 135.6 318 45.6
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 1.3e-24 118.6 97 78.4
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 9.4e-23 112.5 60 86.7
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 4.7e-22 110.2 60 86.7
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 2.6e-20 104.4 95 69.5
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.8e-19 100.9 89 75.3
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.0e-18 96.3 96 63.5
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.0e-17 94.7 64 81.2
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 8.5e-16 89.4 59 72.9
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.8e-13 81.6 88 60.2
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 1.3e-11 75.5 146 42.5
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 4.5e-09 67.0 43 76.7
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.5e-07 62.0 39 82.1
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 9.4e-07 59.3 102 41.2
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 1.2e-06 58.9 140 32.1


User provided reference genes

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