Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.4e-122 440.3 232 100.0
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.7e-121 438.0 232 99.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.4e-87 325.5 239 77.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.9e-86 321.6 241 75.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 6.4e-86 321.2 238 76.5
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.8e-85 319.7 235 74.9
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 4.0e-80 302.0 238 73.1
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 9.2e-77 290.8 189 83.6
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.2e-76 290.4 215 76.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 7.8e-76 287.7 236 72.5
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.3e-75 287.0 236 70.3
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 5.6e-74 281.6 240 67.9
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.2e-73 280.4 239 66.1
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.2e-73 280.4 239 67.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.2e-73 280.4 245 66.9
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.8e-73 279.3 240 67.1
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 4.7e-73 278.5 235 69.4
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 6.2e-73 278.1 238 66.4
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.4e-72 276.9 244 68.4
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.3e-72 276.2 239 66.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.1e-72 275.8 242 68.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 3.1e-72 275.8 235 71.1
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 6.8e-72 274.6 188 77.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 8.9e-72 274.2 239 66.5
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.0e-71 273.1 229 67.7
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.4e-71 272.3 235 68.1
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.3e-70 270.4 234 67.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.2e-70 269.6 235 68.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.9e-70 269.2 189 76.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.7e-70 268.9 187 77.0
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 4.9e-70 268.5 242 67.4
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 6.4e-70 268.1 235 67.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.1e-69 267.3 238 68.5
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-69 267.3 187 77.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.4e-69 266.9 189 77.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.4e-69 266.9 237 66.7
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 5.4e-69 265.0 271 60.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 7.1e-69 264.6 235 66.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 7.1e-69 264.6 189 73.5
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.2e-69 264.2 235 65.5
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.6e-68 263.5 238 66.8
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.6e-68 263.5 236 67.4
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 3.5e-68 262.3 236 67.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.0e-68 261.5 235 65.5
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.0e-67 260.8 198 71.7
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.7e-67 260.0 191 74.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.7e-67 260.0 227 66.1
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.3e-67 259.6 227 65.6
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.3e-67 259.6 236 64.0
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 2.3e-67 259.6 185 74.6
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.0e-67 259.2 183 77.0
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.0e-67 259.2 244 65.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.0e-67 259.2 244 65.2
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 3.9e-67 258.8 237 65.4
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 3.9e-67 258.8 182 78.0
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 8.6e-67 257.7 245 63.7
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.1e-66 257.3 180 76.1
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.5e-66 256.1 249 60.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.3e-66 255.8 190 72.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 3.3e-66 255.8 254 63.0
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.6e-66 255.0 240 62.1
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 7.3e-66 254.6 183 74.9
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 7.3e-66 254.6 183 74.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 7.3e-66 254.6 183 74.9
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 9.5e-66 254.2 255 60.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.6e-65 253.4 256 61.7
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.6e-65 253.4 183 75.4
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.8e-65 252.7 183 74.3
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 3.6e-65 252.3 182 70.9
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.7e-65 251.9 183 74.3
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 8.1e-65 251.1 216 64.8
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.8e-64 250.0 183 73.8
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.4e-64 249.6 183 74.3
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.4e-64 249.6 184 73.4
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.4e-64 249.6 183 72.7
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 3.1e-64 249.2 184 70.7
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.1e-64 249.2 179 75.4
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 4.0e-64 248.8 195 67.7
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.8e-64 248.1 190 71.1
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.5e-63 246.9 206 68.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.0e-63 246.5 243 62.6
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.6e-63 246.1 219 64.4
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 2.6e-63 246.1 229 62.4
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 9.9e-63 244.2 235 61.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.3e-62 243.8 165 77.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 3.8e-62 242.3 219 66.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.9e-62 241.9 309 51.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 6.4e-62 241.5 242 60.3
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 8.4e-62 241.1 183 69.9
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-61 240.0 218 64.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-61 240.0 218 64.2
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.9e-61 240.0 182 69.2
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.2e-60 237.3 187 70.6
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 2.1e-60 236.5 237 63.7
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.7e-60 236.1 235 62.1
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.7e-60 236.1 236 59.7
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.3e-59 233.0 237 59.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 8.1e-57 224.6 203 62.6
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.2e-55 220.7 182 63.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 4.4e-55 218.8 242 55.4
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 9.9e-55 217.6 252 58.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.2e-52 210.7 184 66.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.6e-52 210.3 159 74.8
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.1e-52 209.9 165 67.9
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.5e-50 203.8 213 54.9
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 4.3e-50 202.2 188 62.8
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 7.3e-50 201.4 193 57.5
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.9e-44 181.4 235 51.9
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.6e-42 174.5 179 56.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.1e-40 171.0 143 62.9
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.4e-40 170.6 125 73.6
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.7e-38 163.7 216 53.2
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.1e-37 161.0 193 50.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.8e-35 153.7 262 43.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.8e-33 145.6 108 73.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.9e-32 141.7 101 73.3
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.5e-31 139.0 101 71.3
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.9e-30 135.6 151 53.6
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.9e-30 135.6 94 72.3
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.5e-29 133.3 166 50.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.7e-28 129.8 194 43.8
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.3e-27 127.5 189 44.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 3.0e-27 126.3 189 43.9
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 3.9e-27 125.9 211 41.2
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.7e-26 121.3 72 81.9
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 4.8e-25 119.0 110 56.4
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 6.3e-25 118.6 97 70.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 8.2e-25 118.2 168 41.7
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.4e-24 116.7 140 49.3
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 5.3e-24 115.5 96 60.4
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 2.9e-22 109.8 153 47.1
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.1e-20 103.6 205 38.5
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.4e-19 100.9 76 69.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 5.7e-18 95.5 169 39.1
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.7e-17 94.0 93 62.4
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.1e-13 81.3 128 41.4
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.6e-12 77.4 122 43.4
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 4.4e-10 69.3 178 33.1
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 7.0e-08 62.0 240 31.2
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 9.1e-08 61.6 51 64.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.0e-06 58.2 53 64.2


User provided reference genes

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