Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.5e-256 888.3 451 100.0
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 2.9e-204 715.3 453 78.8
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.2e-202 709.9 453 78.8
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 7.8e-197 690.6 394 85.5
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.8e-185 652.9 395 79.2
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.0e-184 649.4 333 96.1
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 4.9e-183 644.8 414 75.8
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.4e-182 643.3 416 75.2
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.2e-181 640.2 391 79.3
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.7e-181 639.0 401 75.6
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 3.5e-181 638.6 425 75.3
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 4.6e-181 638.3 387 77.3
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 2.3e-180 636.0 410 74.4
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.9e-180 635.2 402 74.4
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 5.0e-180 634.8 395 77.5
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.1e-179 633.6 399 76.4
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.5e-179 632.5 393 76.3
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 4.3e-179 631.7 394 75.9
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 4.7e-178 628.2 395 75.9
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.8e-177 626.3 405 74.3
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 4.0e-177 625.2 414 72.7
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.5e-176 623.2 391 75.4
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.5e-176 623.2 414 72.9
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 2.0e-176 622.9 394 74.4
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 3.4e-176 622.1 396 74.5
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 2.2e-175 619.4 395 74.7
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 1.1e-174 617.1 395 73.9
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 1.4e-174 616.7 399 74.9
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 2.4e-174 615.9 390 75.9
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 3.2e-174 615.5 393 74.0
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 1.2e-173 613.6 415 73.5
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 2.1e-173 612.8 399 73.9
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 6.0e-173 611.3 393 74.8
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.3e-172 610.1 425 69.4
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.7e-172 609.8 394 73.9
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 9.5e-171 604.0 397 72.5
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 9.5e-171 604.0 393 72.8
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 2.1e-170 602.8 399 72.7
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 3.6e-170 602.1 415 71.6
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 5.2e-169 598.2 405 72.3
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 5.2e-169 598.2 392 73.5
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 8.9e-169 597.4 397 72.5
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.9e-169 597.4 423 69.3
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.5e-168 596.7 390 74.1
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 4.4e-168 595.1 398 71.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.3e-167 593.6 397 70.8
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.7e-167 593.2 400 70.2
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 2.2e-167 592.8 454 66.1
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 4.9e-167 591.7 429 67.8
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 6.4e-167 591.3 400 70.0
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.4e-166 590.1 394 71.3
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.9e-166 589.7 393 72.0
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 7.1e-166 587.8 395 71.6
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 2.1e-165 586.3 395 71.4
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 4.6e-165 585.1 395 71.1
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 6.6e-164 581.3 413 69.7
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.1e-163 580.5 413 69.7
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.1e-163 580.5 404 68.8
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-163 580.1 402 70.1
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.5e-163 580.1 395 72.7
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 4.7e-162 575.1 394 70.8
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 6.2e-162 574.7 400 69.5
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 8.1e-162 574.3 401 69.3
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 8.1e-162 574.3 412 68.7
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.1e-161 573.9 389 71.7
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 9.9e-160 567.4 403 68.5
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.7e-159 566.6 395 68.9
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.8e-159 565.5 380 71.3
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 6.4e-159 564.7 394 69.3
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 8.4e-159 564.3 401 67.8
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 4.2e-158 562.0 400 67.8
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 2.7e-157 559.3 398 68.8
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.0e-156 557.4 415 66.3
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 2.3e-156 556.2 403 67.5
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.0e-156 555.8 409 67.0
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 6.6e-156 554.7 403 68.0
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 6.6e-156 554.7 403 68.0
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.1e-155 553.9 397 67.8
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 7.3e-155 551.2 394 68.0
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 3.1e-153 545.8 443 62.3
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 3.8e-151 538.9 401 65.6
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.4e-150 537.0 396 67.9
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 3.2e-150 535.8 394 67.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 8.7e-148 527.7 453 59.2
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.5e-144 516.9 372 68.0
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 2.0e-144 516.5 403 64.0
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 3.4e-144 515.8 329 74.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 4.0e-137 492.3 302 78.8
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 4.6e-133 478.8 356 67.7
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 4.6e-133 478.8 392 62.5
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 6.0e-133 478.4 328 69.5
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 8.7e-132 474.6 323 71.5
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.5e-131 473.8 310 72.6
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.4e-126 457.2 405 55.1
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 7.9e-125 451.4 307 70.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 8.2e-122 441.4 241 91.3
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 2.0e-120 436.8 281 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 4.2e-118 429.1 387 53.7
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 2.8e-114 416.4 316 65.5
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.4e-113 414.1 316 64.9
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 2.8e-106 389.8 359 54.0
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.8e-106 389.8 411 49.9
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 3.5e-104 382.9 288 64.9
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 3.5e-104 382.9 285 65.6
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 7.7e-104 381.7 387 53.5
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 5.0e-103 379.0 281 64.8
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 5.5e-94 349.0 213 76.1
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-89 334.0 237 67.9
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 7.2e-86 322.0 350 51.1
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 7.2e-86 322.0 235 66.0
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 2.6e-83 313.5 461 39.7
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.3e-74 284.6 186 72.0
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 7.0e-65 252.3 161 76.4
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 4.4e-59 233.0 149 75.8
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.6e-56 224.6 158 69.6
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.9e-54 217.6 404 37.4
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 5.6e-54 216.1 145 69.7
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.1e-52 211.8 160 66.2
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 3.8e-50 203.4 158 63.9
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.4e-49 201.4 243 45.3
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 3.5e-40 170.2 469 29.6
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 3.3e-38 163.7 119 66.4
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 9.6e-38 162.2 425 28.5
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.3e-37 161.8 432 29.6
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 7.6e-35 152.5 431 28.3
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.4e-33 148.3 432 28.7
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.9e-31 140.2 235 38.7
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 5.6e-30 136.3 90 67.8
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 4.9e-26 123.2 274 32.8
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 6.5e-26 122.9 74 74.3
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 8.4e-26 122.5 107 55.1
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.4e-25 121.7 82 69.5
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-22 111.7 75 73.3
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.5e-19 101.7 65 76.9
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 3.8e-18 97.1 66 68.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 2.3e-15 87.8 53 71.7
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 6.3e-13 79.7 77 55.8
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 3.6e-08 63.9 37 83.8


User provided reference genes

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