Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.8e-82 308.1 159 100.0
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.1e-81 306.6 159 99.4
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.2e-81 304.7 159 98.7
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.6e-80 301.6 159 98.1
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.7e-80 301.2 159 97.5
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 8.0e-80 300.4 159 96.9
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.0e-79 300.1 159 97.5
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.5e-78 296.2 159 96.9
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.1e-73 280.0 159 92.5
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 2.2e-37 159.5 87 94.3
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 5.1e-34 148.3 87 85.1
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 9.5e-33 144.1 87 83.9
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 9.5e-33 144.1 87 82.8
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 7.6e-30 134.4 87 77.0
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 7.6e-30 134.4 87 77.0
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 3.7e-29 132.1 87 75.9
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 4.9e-29 131.7 87 75.9
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 8.4e-29 131.0 85 76.5
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 8.4e-29 131.0 85 76.5
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 8.4e-29 131.0 87 78.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 1.9e-28 129.8 87 73.6
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.9e-28 129.8 87 74.7
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.9e-28 129.8 87 74.7
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.9e-28 129.8 87 78.2
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.4e-28 129.4 87 74.7
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 3.2e-28 129.0 87 74.7
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 4.1e-28 128.6 85 76.5
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 4.1e-28 128.6 87 77.0
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 4.1e-28 128.6 87 73.6
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 7.1e-28 127.9 87 73.6
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 7.1e-28 127.9 87 73.6
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 9.2e-28 127.5 104 70.2
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 1.2e-27 127.1 87 70.1
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 2.1e-27 126.3 87 77.0
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 3.5e-27 125.6 87 71.3
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 4.6e-27 125.2 87 70.1
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 1.7e-26 123.2 87 72.4
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 5.1e-26 121.7 87 72.4
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 8.6e-26 120.9 87 69.0
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 1.1e-25 120.6 87 72.4
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 1.1e-25 120.6 87 69.0
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.5e-25 120.2 87 72.4
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 1.9e-25 119.8 88 69.3
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 1.9e-25 119.8 87 70.1
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 5.6e-25 118.2 87 67.8
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 7.3e-25 117.9 87 66.7
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 9.6e-25 117.5 87 71.3
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 1.6e-24 116.7 87 70.1
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 2.1e-24 116.3 87 70.1
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 3.6e-24 115.5 85 67.1
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 4.7e-24 115.2 87 69.0
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 8.1e-24 114.4 87 66.7
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 1.8e-23 113.2 87 67.8
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 1.8e-23 113.2 87 69.0
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.8e-23 113.2 87 69.0
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.4e-23 112.8 87 67.8
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 2.4e-23 112.8 87 67.8
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 2.4e-23 112.8 87 67.8
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 67.8
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 67.8
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 69.0
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 4.0e-23 112.1 87 66.7
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.0e-23 112.1 87 67.8
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.0e-23 112.1 95 62.1
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 6.8e-23 111.3 95 61.1
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 1.5e-22 110.2 88 68.2
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.5e-22 110.2 87 67.8
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.0e-22 109.8 87 65.5
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 2.6e-22 109.4 89 64.0
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 3.4e-22 109.0 87 65.5
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 4.4e-22 108.6 87 64.4
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 64.4
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 65.5
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 63.2
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 63.2
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 62.1
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 64.4
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 9.9e-22 107.5 96 61.5
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 9.9e-22 107.5 87 64.4
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 9.9e-22 107.5 87 63.2
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 2.9e-21 105.9 87 64.4
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 6.4e-21 104.8 96 60.4
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 1.4e-20 103.6 117 44.4
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 1.9e-20 103.2 85 61.2
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 1.9e-20 103.2 85 61.2
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 1.9e-20 103.2 85 61.2
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 2.4e-20 102.8 85 60.0
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 2.4e-20 102.8 85 60.0
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 2.4e-20 102.8 96 59.4
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 3.2e-20 102.4 85 61.2
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 3.2e-20 102.4 96 59.4
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 4.2e-20 102.1 85 61.2
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 5.4e-20 101.7 85 60.0
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 7.1e-20 101.3 87 58.6
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 7.1e-20 101.3 84 60.7
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 9.3e-20 100.9 95 56.8
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 2.1e-19 99.8 110 48.2
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 2.1e-19 99.8 87 63.2
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 2.1e-19 99.8 85 58.8
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 2.7e-19 99.4 86 61.6
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 2.7e-19 99.4 87 57.5
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 4.6e-19 98.6 87 59.8
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 6.0e-19 98.2 110 47.3
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 3.0e-18 95.9 85 60.0
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 6.6e-18 94.7 87 56.3
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 6.6e-18 94.7 78 60.3
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 6.6e-18 94.7 87 59.8
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.1e-17 94.0 96 56.2
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 3.3e-17 92.4 110 43.6
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 1.1e-15 87.4 93 51.6
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 1.2e-14 84.0 81 59.3
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 1.2e-14 84.0 88 55.7
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 1.2e-14 84.0 99 47.5
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 2.0e-14 83.2 113 42.5
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 2.0e-14 83.2 62 69.4
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 8.4e-13 77.8 80 51.2
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 1.7e-10 70.1 85 50.6
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 6.6e-10 68.2 90 42.2
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 2.5e-09 66.2 72 52.8
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 7.3e-09 64.7 62 58.1


User provided reference genes

Program Settings