Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010217 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 2.2e-188 662.1 330 100.0
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 1.2e-16 91.7 150 44.0
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 3.7e-15 86.7 153 40.5
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 6.4e-15 85.9 141 44.0
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 9.2e-14 82.0 138 38.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 9.2e-14 82.0 147 41.5
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 9.2e-14 82.0 158 38.0
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 2.1e-13 80.9 150 41.3
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 3.5e-13 80.1 150 38.0
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.0e-12 78.6 150 40.0
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 2.3e-12 77.4 131 42.0
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.1e-12 76.3 153 37.9
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-11 75.1 150 38.0
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-11 75.1 150 38.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.3e-11 73.6 45 77.8
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 3.3e-11 73.6 152 37.5
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 4.3e-11 73.2 39 87.2
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.6e-10 71.2 152 36.8
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 3.6e-10 70.1 39 84.6
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 3.6e-10 70.1 151 38.4
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 4.7e-10 69.7 173 32.9
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 4.7e-10 69.7 150 36.7
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.7e-10 69.7 150 36.7
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 6.2e-10 69.3 151 35.8
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 8.1e-10 68.9 39 82.1
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 8.1e-10 68.9 45 68.9
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 1.4e-09 68.2 39 79.5
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 3.1e-09 67.0 38 78.9
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 4.0e-09 66.6 39 74.4
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 4.0e-09 66.6 39 79.5
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 4.0e-09 66.6 39 79.5
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 5.2e-09 66.2 39 79.5
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 5.2e-09 66.2 49 67.3
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 5.2e-09 66.2 39 79.5
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.8e-09 65.9 39 76.9
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 6.8e-09 65.9 38 78.9
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 8.9e-09 65.5 174 31.6
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 8.9e-09 65.5 133 36.8
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.2e-08 65.1 39 71.8
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 2.0e-08 64.3 39 76.9
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.6e-08 63.9 131 35.9
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 4.4e-08 63.2 160 31.2
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 5.8e-08 62.8 39 71.8
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 5.8e-08 62.8 38 78.9
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 7.6e-08 62.4 160 33.8
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 7.6e-08 62.4 38 73.7
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 7.6e-08 62.4 150 36.0
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 2.2e-07 60.8 40 70.0
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 2.2e-07 60.8 40 70.0
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 2.2e-07 60.8 39 66.7
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 2.2e-07 60.8 43 62.8
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 4.9e-07 59.7 36 80.6
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 4.9e-07 59.7 36 80.6
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 6.4e-07 59.3 36 77.8
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.4e-07 59.3 36 77.8
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.4e-07 59.3 36 77.8
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.4e-07 59.3 36 77.8
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.4e-07 59.3 36 77.8
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 6.4e-07 59.3 38 68.4
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 6.4e-07 59.3 36 77.8
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 8.4e-07 58.9 36 83.3
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.4e-06 58.2 36 75.0
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 2.4e-06 57.4 36 72.2
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.2e-06 56.6 149 34.9
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 4.2e-06 56.6 36 75.0
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 4.2e-06 56.6 36 69.4
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 9.3e-06 55.5 45 57.8


User provided reference genes

Program Settings