Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 7.4e-98 360.5 182 100.0
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 4.8e-97 357.8 182 98.9
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.7e-78 296.2 180 82.8
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.1e-77 293.5 180 81.7
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 3.0e-75 285.4 180 77.8
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 3.0e-75 285.4 181 81.8
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 1.6e-71 273.1 180 76.7
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 2.9e-70 268.9 180 73.9
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 1.9e-69 266.2 181 75.1
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 3.2e-69 265.4 182 73.1
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 4.2e-69 265.0 182 73.6
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 4.2e-69 265.0 180 72.8
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 5.5e-69 264.6 182 73.6
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 9.4e-69 263.8 180 73.3
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.7e-68 262.3 182 72.0
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 3.6e-68 261.9 180 73.3
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 4.7e-68 261.5 182 71.4
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 8.0e-68 260.8 182 72.0
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 8.0e-68 260.8 182 72.0
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 1.0e-67 260.4 180 72.8
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 1.4e-67 260.0 182 73.6
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 1.8e-67 259.6 180 71.7
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 1.8e-67 259.6 180 72.8
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 5.2e-67 258.1 182 71.4
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 5.2e-67 258.1 181 72.4
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 5.2e-67 258.1 180 72.2
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 8.8e-67 257.3 180 72.2
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 4.4e-66 255.0 181 72.4
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 4.4e-66 255.0 158 81.0
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 5.7e-66 254.6 181 71.8
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 9.8e-66 253.8 180 71.1
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 9.8e-66 253.8 181 71.3
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 2.2e-65 252.7 181 72.4
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 2.8e-65 252.3 154 83.8
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 8.3e-65 250.8 182 69.2
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.1e-64 250.4 180 72.8
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 1.4e-64 250.0 185 69.7
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.4e-64 250.0 157 79.0
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 4.1e-64 248.4 181 69.6
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 5.4e-64 248.1 181 69.6
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 7.0e-64 247.7 181 70.2
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 9.2e-64 247.3 181 71.3
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 1.6e-63 246.5 181 69.6
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 1.6e-63 246.5 181 70.7
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 2.7e-63 245.7 182 70.9
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 7.7e-63 244.2 181 70.2
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 1.0e-62 243.8 184 66.3
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.3e-62 243.4 186 70.4
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 5.0e-62 241.5 181 69.1
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 3.3e-61 238.8 182 69.2
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 5.6e-61 238.0 180 66.7
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 7.3e-61 237.7 183 66.1
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 7.3e-61 237.7 184 66.3
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 1.6e-60 236.5 183 65.0
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 2.1e-60 236.1 168 71.4
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 3.6e-60 235.3 180 67.2
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 4.7e-60 235.0 185 67.0
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 8.0e-60 234.2 146 78.1
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 1.8e-59 233.0 183 67.2
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 2.3e-59 232.6 180 66.7
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 2.3e-59 232.6 180 66.7
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 3.0e-59 232.3 186 67.7
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 4.0e-59 231.9 181 66.3
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 4.0e-59 231.9 180 66.1
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 6.8e-59 231.1 156 74.4
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 8.9e-59 230.7 180 66.7
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 1.2e-58 230.3 180 66.1
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 5.7e-58 228.0 186 67.7
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 7.5e-58 227.6 180 66.7
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 7.5e-58 227.6 180 66.7
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 9.8e-58 227.3 182 65.4
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 8.3e-57 224.2 170 65.9
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 1.4e-56 223.4 202 60.4
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 1.6e-55 219.9 182 63.2
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 3.5e-55 218.8 182 62.1
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 7.8e-55 217.6 182 61.0
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 1.7e-54 216.5 180 63.9
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 3.0e-54 215.7 147 74.1
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 3.0e-54 215.7 181 64.1
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 6.6e-54 214.5 169 65.7
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 1.9e-53 213.0 116 87.9
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 2.5e-53 212.6 173 63.0
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 3.3e-53 212.2 182 62.1
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 3.3e-53 212.2 159 70.4
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 7.3e-53 211.1 114 85.1
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 1.2e-52 210.3 182 61.0
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 1.2e-52 210.3 116 87.1
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 1.6e-52 209.9 185 62.2
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 3.6e-52 208.8 181 61.9
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 6.2e-52 208.0 157 66.2
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 1.0e-51 207.2 184 58.2
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 1.4e-51 206.8 182 58.8
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 3.1e-51 205.7 182 58.2
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 3.1e-51 205.7 164 63.4
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 4.0e-51 205.3 129 78.3
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 5.2e-51 204.9 115 84.3
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 2.0e-50 203.0 184 57.1
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 2.6e-50 202.6 179 58.7
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 2.6e-50 202.6 183 57.9
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 2.6e-50 202.6 183 57.9
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 3.4e-50 202.2 115 83.5
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 4.4e-50 201.8 183 56.3
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 5.8e-50 201.4 148 68.2
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 5.8e-50 201.4 148 66.9
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 5.8e-50 201.4 180 58.3
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 7.5e-50 201.1 184 59.2
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 1.3e-49 200.3 181 59.1
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 2.2e-49 199.5 173 65.3
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 3.7e-49 198.7 145 65.5
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 8.3e-49 197.6 181 56.4
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 1.4e-48 196.8 177 57.6
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 1.6e-47 193.4 156 62.8
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 3.1e-43 179.1 180 57.2
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.2e-42 177.2 170 55.3
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 7.5e-42 174.5 115 73.0
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 2.2e-41 172.9 153 59.5
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 2.4e-40 169.5 120 65.0
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 8.1e-36 154.5 110 62.7
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.1e-35 154.1 165 52.7
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 1.2e-34 150.6 126 62.7
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 2.0e-34 149.8 119 58.8
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 3.4e-34 149.1 110 60.9
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 5.4e-32 141.7 106 59.4
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 6.9e-27 124.8 103 64.1
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 3.9e-22 109.0 59 86.4
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 3.9e-22 109.0 59 86.4
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 6.2e-20 101.7 69 73.9
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 6.4e-17 91.7 106 51.9
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 2.4e-16 89.7 52 80.8


User provided reference genes

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