Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-169 599.7 308 100.0
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.5e-140 501.9 311 85.2
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.6e-140 501.5 304 86.2
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.7e-137 491.5 304 83.9
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.1e-136 490.3 304 83.6
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.8e-135 483.8 304 84.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 9.8e-135 483.8 315 81.6
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.1e-133 478.4 304 79.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.2e-132 476.9 302 82.5
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-131 473.8 306 79.4
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.9e-131 471.9 308 78.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 8.6e-131 470.7 308 77.9
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-130 469.5 297 79.5
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-130 469.2 297 79.5
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.6e-129 466.5 297 78.8
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.6e-129 466.5 311 78.1
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.7e-129 464.9 304 78.0
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 8.1e-129 464.2 312 77.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.1e-128 463.8 312 78.2
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.8e-128 463.0 312 76.6
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 3.1e-128 462.2 308 76.0
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.8e-128 461.1 312 76.3
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.2e-127 460.3 310 76.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.2e-127 460.3 312 76.0
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-127 459.1 304 77.0
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.6e-127 459.1 304 77.0
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.4e-127 458.8 307 77.9
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.4e-127 458.4 307 77.9
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 7.5e-127 457.6 312 75.6
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 7.5e-127 457.6 312 76.0
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.7e-126 455.3 308 75.3
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.7e-126 455.3 308 75.3
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 4.9e-126 454.9 304 76.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.9e-125 453.0 312 75.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.9e-125 453.0 312 75.6
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 4.1e-125 451.8 303 76.9
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.4e-125 451.4 304 76.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.2e-124 450.3 304 78.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.1e-124 449.5 304 74.3
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.7e-124 449.1 309 73.8
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.7e-124 449.1 307 75.6
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.6e-124 448.4 308 74.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.9e-123 445.3 302 74.5
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 5.1e-123 444.9 312 74.4
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.9e-122 443.0 311 74.0
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.9e-122 443.0 312 73.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.5e-122 442.6 302 74.2
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.3e-122 442.2 312 73.7
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 4.3e-122 441.8 312 71.8
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 4.3e-122 441.8 313 73.8
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 5.6e-122 441.4 302 73.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 5.6e-122 441.4 312 72.1
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.6e-122 441.4 297 75.1
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 9.5e-122 440.7 299 74.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.6e-121 439.9 307 74.6
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.6e-121 438.7 315 72.7
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.1e-120 435.6 304 72.4
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 4.0e-120 435.3 310 74.5
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.2e-120 434.9 304 75.0
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 6.8e-120 434.5 311 73.6
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 8.9e-120 434.1 308 71.8
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.9e-120 434.1 307 73.6
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.2e-119 433.7 301 75.1
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.2e-119 433.7 313 72.5
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.6e-119 432.6 280 79.6
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.4e-119 432.2 305 73.1
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.4e-119 432.2 303 72.9
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 5.8e-119 431.4 312 71.8
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.8e-119 431.4 339 69.3
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.6e-119 431.0 308 72.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-118 430.3 262 85.5
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.3e-118 430.3 312 71.8
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.7e-118 429.9 312 69.6
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.2e-118 429.5 305 71.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.2e-118 429.5 317 71.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.8e-118 428.7 273 78.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 4.9e-118 428.3 389 60.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 6.4e-118 427.9 308 72.1
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 6.4e-118 427.9 302 74.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 8.4e-118 427.6 308 70.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.2e-116 423.7 304 70.7
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.2e-116 423.7 335 69.6
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.6e-116 423.3 304 69.4
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 6.0e-116 421.4 282 75.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 7.8e-116 421.0 303 71.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.0e-115 420.6 308 69.5
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.0e-115 420.6 309 70.9
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.7e-115 419.9 304 71.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.0e-115 419.1 303 71.6
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.0e-115 419.1 308 69.5
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 5.1e-115 418.3 308 70.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.1e-115 418.3 311 69.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 6.6e-115 417.9 299 72.9
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 6.6e-115 417.9 309 70.2
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 6.6e-115 417.9 308 68.5
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 8.7e-115 417.5 308 69.2
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 8.7e-115 417.5 308 69.2
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.7e-115 417.5 301 71.4
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 8.7e-115 417.5 295 71.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-114 417.2 299 72.6
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.1e-114 417.2 353 62.3
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.9e-114 416.4 307 70.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.5e-114 416.0 308 69.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 3.3e-114 415.6 308 71.1
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 7.3e-114 414.5 308 68.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 7.3e-114 414.5 301 71.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.6e-113 413.3 310 69.4
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.6e-113 413.3 301 69.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 8.1e-113 411.0 267 75.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.8e-112 409.8 305 69.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 3.1e-112 409.1 304 68.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 4.0e-112 408.7 299 71.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.6e-111 406.0 276 76.1
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 5.8e-111 404.8 301 68.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 7.6e-111 404.4 280 72.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 8.4e-110 401.0 309 70.9
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 8.4e-110 401.0 280 71.8
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 3.2e-109 399.1 350 62.6
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 7.1e-109 397.9 306 66.0
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.7e-107 391.0 260 75.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 9.6e-106 387.5 303 67.7
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.1e-105 386.3 277 69.3
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 7.6e-103 377.9 307 62.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.9e-101 373.2 307 61.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 9.3e-101 370.9 302 62.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.5e-98 363.6 302 62.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.8e-97 358.6 229 78.6
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.1e-97 357.8 278 64.0
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 8.7e-91 337.8 271 62.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.0e-87 326.6 232 73.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.2e-81 306.6 273 61.2
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 3.7e-81 305.8 301 53.5
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.4e-80 303.1 280 52.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.1e-80 302.4 298 53.0
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.4e-79 299.3 278 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 5.9e-79 298.5 291 53.6
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.9e-78 296.2 288 51.7
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 6.5e-78 295.0 288 51.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.1e-77 294.3 301 53.5
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.1e-77 294.3 281 55.5
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 6.7e-75 285.0 298 51.0
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 7.4e-74 281.6 302 54.0
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.4e-71 272.7 206 68.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 5.9e-71 271.9 250 58.0
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-67 261.2 240 55.8
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.6e-66 256.5 327 51.4
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.2e-60 237.7 198 65.7
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.5e-58 230.7 184 65.2
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.7e-57 227.3 149 73.2
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-57 226.9 217 59.9
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 4.1e-56 222.6 221 53.8
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.9e-53 213.8 222 48.6
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 9.4e-53 211.5 186 62.4
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.3e-49 201.1 153 69.3
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.8e-48 197.2 153 62.7
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 9.1e-48 194.9 294 37.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 8.9e-35 151.8 275 32.0
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 3.1e-32 143.3 312 30.4
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 3.9e-30 136.3 108 68.5
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.7e-25 119.8 76 81.6
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.4e-24 115.9 209 32.1
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.0e-23 114.0 133 48.1
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 5.0e-22 109.4 287 27.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-19 101.3 124 48.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.5e-18 97.8 286 29.0
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.0e-14 83.6 186 38.2
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 3.7e-09 66.6 56 53.6
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 2.1e-07 60.8 40 65.0


User provided reference genes

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