Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 3090.4 1564 100.0
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2958.3 1610 94.7
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2706.4 1602 86.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2694.5 1604 85.5
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2547.3 1609 79.6
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2545.0 1614 80.4
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2536.9 1610 79.1
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2536.5 1611 79.8
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2524.6 1633 79.9
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2518.8 1597 79.7
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2518.4 1506 85.1
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2517.3 1612 79.1
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2512.3 1613 78.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2503.4 1596 79.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2488.8 1610 78.1
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2484.5 1604 78.2
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2481.1 1611 78.4
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2470.7 1610 77.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2465.6 1608 76.9
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2465.3 1619 77.1
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2464.5 1603 78.0
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2463.0 1623 77.2
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2459.9 1613 77.1
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2449.5 1597 77.9
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2448.7 1598 76.8
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2448.3 1604 76.9
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2446.8 1606 77.9
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2440.6 1612 76.7
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2432.1 1611 76.0
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2407.9 1581 76.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2404.4 1613 75.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2403.6 1612 74.9
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2400.9 1600 76.0
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2395.5 1596 75.7
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2394.8 1616 74.9
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2392.1 1501 80.5
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2390.9 1597 76.6
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2390.5 1607 75.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2390.1 1636 74.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2389.8 1667 74.2
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2370.1 1633 72.8
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2364.3 1607 74.6
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2363.6 1612 73.9
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2352.8 1623 73.8
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2343.9 1604 74.4
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2336.6 1611 73.0
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2335.5 1607 73.9
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2328.5 1612 72.5
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2328.1 1923 65.1
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2318.1 1650 73.5
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2310.8 1605 73.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2308.9 1616 73.1
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2303.9 1615 72.3
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2293.1 1603 72.2
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2283.4 1595 73.0
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2280.0 1600 73.7
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2258.0 1620 71.2
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2257.6 1620 71.7
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1614 71.3
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2249.2 1445 78.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2247.2 1505 75.1
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2239.5 1617 71.1
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2238.4 1590 71.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2234.1 1604 71.4
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2233.4 1609 70.9
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2233.4 1620 71.1
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2207.6 1548 73.5
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2186.8 1595 70.1
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2181.4 1593 70.6
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2180.6 1414 77.2
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2180.2 1610 70.1
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2160.2 1611 69.3
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2154.4 1616 68.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2148.6 1615 69.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1609 68.4
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2133.2 1598 68.8
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2127.4 1613 68.0
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2121.3 1598 68.6
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2120.5 1611 68.5
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2117.0 1611 68.4
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2109.3 1351 79.4
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2107.4 1953 58.6
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2103.6 1407 77.1
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2092.4 1623 67.6
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2072.0 1458 72.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2058.9 1609 65.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2057.0 1597 66.2
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2021.5 1597 65.1
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2008.8 1603 65.1
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1954.9 1587 64.6
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1948.3 1603 64.5
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1939.9 1605 63.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1902.1 1197 80.1
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1830.8 1218 78.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1785.0 1562 63.1
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1709.1 1411 65.6
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1658.7 1100 76.0
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1644.0 1372 66.3
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1541.6 980 79.6
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1485.3 970 77.8
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1389.0 1633 48.1
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1347.8 1207 57.7
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1346.6 1623 48.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1288.1 1603 45.6
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1204.9 1077 59.5
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1184.1 1575 47.1
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1105.1 733 77.2
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 4.2e-306 1055.4 644 81.2
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 4.9e-283 978.8 632 77.8
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.6e-265 919.1 601 77.9
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 6.1e-265 918.7 581 79.5
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.1e-264 915.6 589 78.9
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 4.4e-231 806.2 507 81.7
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 7.8e-228 795.4 604 69.7
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 8.9e-224 781.9 534 75.5
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-214 751.1 463 81.9
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 7.8e-212 742.3 513 75.8
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 6.6e-203 712.6 639 59.3
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 8.9e-200 702.2 509 71.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 3.8e-198 696.8 655 59.2
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 6.9e-192 676.0 399 85.0
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.1e-189 668.7 522 68.0
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 2.8e-185 654.1 476 71.0
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.6e-164 583.6 481 60.7
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.6e-161 575.1 554 60.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.0e-150 539.3 333 78.1
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 4.2e-141 507.3 292 89.7
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.5e-133 481.5 319 77.4
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 6.7e-131 473.4 313 79.2
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 7.2e-125 453.4 283 83.4
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 2.7e-124 451.4 318 73.0
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 6.3e-121 440.3 398 58.5
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.6e-116 425.6 371 59.6
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.8e-115 422.2 246 82.1
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-114 419.1 322 68.3
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.1e-94 350.9 250 68.0
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 8.9e-91 340.1 403 48.4
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.6e-76 291.6 161 88.8
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 4.0e-75 288.1 162 85.2
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 4.6e-63 248.1 142 85.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.6e-60 239.6 142 78.2
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.1e-56 226.9 164 72.6
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.1e-54 218.0 146 71.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.6e-50 205.7 212 54.7
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.2e-47 196.8 122 79.5
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 7.4e-45 187.6 129 72.9
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.4e-42 178.7 102 85.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 7.9e-39 167.5 93 86.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 3.0e-38 165.6 100 77.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.5e-37 162.5 101 78.2
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.7e-37 160.6 143 60.1
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-36 160.2 143 60.1
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-36 160.2 143 60.1
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-36 160.2 143 60.1
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-36 160.2 143 60.1
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-36 160.2 143 60.1
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.7e-36 159.8 143 59.4
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 8.2e-36 157.5 143 59.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-34 152.1 139 57.6
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 3.9e-30 138.7 91 73.6
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.7e-29 134.0 130 56.2
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.7e-28 133.3 130 56.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.7e-23 115.9 91 62.6
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 4.7e-23 115.2 91 61.5
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.1e-21 110.5 108 61.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 9.1e-19 100.9 74 62.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.3e-17 97.1 50 88.0
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.7e-15 88.6 82 57.3
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 6.1e-15 88.2 55 78.2
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 9.7e-13 80.9 56 73.2
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 8.3e-12 77.8 51 70.6
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.1e-11 77.4 72 51.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-11 77.0 54 70.4
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 4.1e-11 75.5 50 70.0
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 7.0e-11 74.7 171 39.2
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.2e-07 63.9 54 57.4
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 2.3e-06 59.7 70 48.6
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 5.2e-06 58.5 38 63.2


User provided reference genes

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