Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 0.0e+00 2619.0 1312 100.0
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 0.0e+00 1274.6 1389 53.7
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.5e-304 1050.0 1028 56.2
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.0e-281 972.6 997 55.8
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 9.0e-254 881.3 1328 43.9
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 9.6e-248 861.3 1003 51.5
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.8e-247 859.8 995 51.4
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.5e-245 852.4 1004 53.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.7e-226 789.3 788 56.7
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.6e-210 737.6 1345 38.5
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-176 625.2 950 43.7
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.9e-176 622.1 1022 42.0
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 4.1e-174 616.7 1342 36.8
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 3.6e-162 577.0 1323 36.2
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.4e-161 574.3 1352 34.5
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 2.9e-159 567.4 1321 36.0
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 6.9e-145 519.6 1085 36.9
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.9e-142 511.5 1327 33.5
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.9e-139 501.5 1345 33.5
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.5e-131 474.6 1328 32.5
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 6.3e-130 469.9 1331 32.5
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 6.3e-130 469.9 1364 33.0
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.4e-129 468.0 1004 36.0
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 3.1e-129 467.6 1336 33.2
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.5e-126 456.8 1215 33.3
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 5.1e-124 450.3 1021 35.1
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.5e-123 448.7 1184 33.1
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.4e-123 446.4 1339 32.5
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.4e-121 442.2 1332 32.4
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 2.4e-121 441.4 1297 31.5
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 5.3e-121 440.3 1010 35.1
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 2.6e-120 438.0 1125 34.3
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 9.4e-118 429.5 1145 34.0
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.2e-117 429.1 1187 32.4
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 3.1e-113 414.5 1307 30.6
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-112 412.5 849 36.7
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.8e-105 388.7 1095 32.4
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 8.5e-103 379.8 997 33.2
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.5e-102 377.1 1168 31.9
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 7.2e-102 376.7 1099 32.4
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 4.0e-100 370.9 1117 32.8
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.2e-99 369.4 485 47.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 4.4e-99 367.5 1004 33.3
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.4e-97 361.7 1173 32.1
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 3.1e-97 361.3 1017 32.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.0e-95 356.3 1117 32.2
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.8e-95 354.4 1021 33.2
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 8.5e-95 353.2 1023 33.1
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 8.0e-93 346.7 1092 31.8
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.0e-92 346.3 1017 32.0
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.0e-91 342.0 1022 32.7
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 3.7e-90 337.8 1001 31.7
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 3.1e-89 334.7 849 32.9
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 7.0e-89 333.6 1098 30.6
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 6.6e-87 327.0 1004 30.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.5e-86 325.1 1065 30.0
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 7.2e-86 323.6 1004 30.1
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.7e-82 312.4 1040 30.1
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.4e-81 309.3 1179 29.9
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.3e-78 297.7 1177 29.7
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.0e-76 293.1 1105 28.1
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 7.0e-65 253.8 1218 28.0
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 3.5e-64 251.5 960 30.1
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.7e-63 249.2 1183 27.2
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.3e-63 248.8 1047 28.9
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 2.5e-62 245.4 1201 28.6
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 8.1e-61 240.4 1213 28.1
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.4e-60 239.6 1043 27.7
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 8.9e-60 236.9 1163 26.9
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.2e-56 226.5 974 27.6
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.6e-56 226.1 1007 27.9
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.7e-55 222.6 967 28.1
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.6e-55 220.7 611 32.7
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 6.6e-55 220.7 994 27.1
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 8.6e-55 220.3 1212 27.0
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 8.6e-55 220.3 1212 27.0
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.9e-54 219.2 1330 26.2
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.9e-54 219.2 1150 25.9
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 3.3e-54 218.4 1409 25.8
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.8e-53 215.3 536 31.9
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.1e-52 211.8 1434 25.0
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 4.0e-52 211.5 1200 26.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.9e-50 204.5 606 32.3
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 6.4e-50 204.1 1046 26.6
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 6.0e-48 197.6 870 29.0
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.0e-47 196.8 734 29.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 8.7e-47 193.7 1007 26.7
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.5e-46 193.0 1351 26.3
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 7.3e-46 190.7 1143 26.0
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 9.6e-46 190.3 931 27.2
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.1e-44 185.3 1348 25.8
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 9.9e-43 180.3 1031 27.1
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.6e-40 172.9 971 24.9
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.3e-38 165.2 302 40.7
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.1e-36 158.7 1104 27.0
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.5e-35 156.4 1308 23.5
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.9e-34 151.4 561 28.9
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.4e-33 149.1 1227 23.8
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.0e-32 144.4 951 25.7
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 6.2e-29 134.4 378 32.3
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.4e-28 132.5 594 27.4
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 4.9e-26 124.8 988 25.2
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.2e-24 120.2 356 31.5
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.2e-24 120.2 838 25.5
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 3.5e-24 118.6 1238 22.9
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 3.9e-23 115.2 190 43.2
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.1e-22 113.6 1164 24.2
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 1.1e-22 113.6 529 26.5
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 3.3e-22 112.1 277 34.3
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 4.0e-20 105.1 550 24.0
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 5.8e-19 101.3 1053 22.3
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.7e-18 99.8 361 27.1
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 3.8e-18 98.6 709 22.7
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 4.9e-18 98.2 790 24.6
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 9.3e-17 94.0 947 22.5
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 4.6e-16 91.7 382 26.7
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 6.1e-16 91.3 133 41.4
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.9e-15 88.6 233 28.8
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 6.7e-15 87.8 724 24.6
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 6.7e-15 87.8 253 26.9
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 1.5e-14 86.7 291 28.2
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.9e-14 86.3 826 23.0
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 3.3e-14 85.5 308 27.9
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.8e-13 82.4 320 28.1
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.8e-13 81.6 563 23.8
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-12 79.0 301 24.6
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 3.1e-12 79.0 301 24.6
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 3.1e-12 79.0 301 24.6
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 5.3e-12 78.2 287 29.6
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 6.9e-12 77.8 235 30.2
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 9.0e-12 77.4 296 25.3
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 9.0e-12 77.4 296 25.3
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.5e-11 76.6 284 26.1
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 1.5e-11 76.6 407 24.1
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 2.0e-11 76.3 238 27.3
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 4.5e-11 75.1 496 24.6
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 5.9e-11 74.7 210 28.6
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 5.9e-11 74.7 210 28.6
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 5.9e-11 74.7 665 22.6
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.9e-10 72.4 492 25.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.9e-10 72.4 234 28.6
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 2.9e-10 72.4 288 31.2
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 3.8e-10 72.0 204 27.9
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 5.0e-10 71.6 253 26.5
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 5.0e-10 71.6 255 26.3
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 2.5e-09 69.3 324 24.7
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 4.2e-09 68.6 232 28.0
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 9.4e-09 67.4 437 24.3
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-08 67.0 283 27.2
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 2.7e-08 65.9 448 23.7
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.6e-08 65.5 336 25.6
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.8e-07 63.2 443 25.5
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 2.3e-07 62.8 500 22.2
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 2.3e-07 62.8 434 24.4
Os08g0157800 Oryza sativa ssp. japonica HOM05D057671 ORTHO05D050048 2.3e-07 62.8 201 25.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 3.9e-07 62.0 376 24.5
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.9e-07 62.0 675 22.2
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 6.7e-07 61.2 377 24.9
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 8.8e-07 60.8 391 23.8
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 1.1e-06 60.5 338 24.9
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.1e-06 60.5 452 21.5
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 1.5e-06 60.1 509 24.4
HPP92_003258 Vanilla planifolia HOM05D006657 ORTHO05D005964 1.5e-06 60.1 625 20.3
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 2.5e-06 59.3 503 22.9
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 3.3e-06 58.9 506 23.1
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 4.3e-06 58.5 423 24.6
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 5.7e-06 58.2 260 24.6
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 5.7e-06 58.2 260 24.6
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 5.7e-06 58.2 341 24.9
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 9.7e-06 57.4 681 21.7


User provided reference genes

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