Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 9.1e-168 593.6 318 100.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.2e-166 589.0 318 99.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.5e-143 511.9 318 84.6
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 4.5e-143 511.5 318 85.5
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 4.5e-143 511.5 318 85.5
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 5.6e-141 504.6 362 76.2
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 6.0e-135 484.6 318 81.8
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 6.0e-135 484.6 317 81.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 6.6e-134 481.1 318 81.8
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 8.0e-132 474.2 318 78.6
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 4.0e-131 471.9 319 78.1
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 5.2e-131 471.5 318 78.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.2e-130 470.3 318 78.6
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.5e-130 469.9 318 79.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 3.4e-130 468.8 318 76.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.9e-129 465.7 319 78.1
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 3.7e-129 465.3 318 76.1
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.9e-129 464.9 320 78.1
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 6.4e-129 464.5 318 76.7
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 6.4e-129 464.5 318 77.7
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 6.4e-129 464.5 318 78.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.3e-129 464.2 318 78.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.1e-128 463.8 319 77.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.4e-128 463.4 319 77.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.9e-128 463.0 318 77.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 76.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 78.3
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 3.2e-128 462.2 318 76.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 5.4e-128 461.5 318 78.3
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 5.4e-128 461.5 318 78.6
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 7.0e-128 461.1 318 77.7
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 9.2e-128 460.7 318 77.4
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 9.2e-128 460.7 318 76.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 77.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 76.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.6e-127 459.9 318 77.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.0e-127 459.5 318 76.1
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.5e-127 458.8 319 76.5
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 3.5e-127 458.8 318 75.8
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 7.8e-127 457.6 318 76.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.0e-126 457.2 318 75.2
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 77.7
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 8.6e-126 454.1 318 75.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 8.6e-126 454.1 318 77.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.1e-125 453.8 318 74.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.5e-125 453.4 318 76.4
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.9e-125 453.0 318 75.8
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 76.4
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 7.3e-125 451.1 318 77.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.1e-124 449.5 318 76.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.1e-124 449.5 318 73.9
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.6e-124 448.7 319 79.3
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.6e-124 448.7 318 75.2
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 6.2e-124 448.0 318 76.1
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 8.1e-124 447.6 318 75.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 8.1e-124 447.6 318 75.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.0e-123 445.3 318 75.8
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.2e-122 443.7 318 75.2
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 74.8
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.6e-122 442.6 318 75.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 9.9e-122 440.7 319 74.0
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 75.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.4e-121 438.0 318 72.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.1e-120 437.2 317 72.6
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.1e-120 437.2 318 74.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.4e-120 436.8 318 73.3
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 7.1e-120 434.5 318 73.3
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.1e-119 433.0 318 72.0
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.5e-119 432.2 318 73.3
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.0e-118 429.1 318 71.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.5e-117 426.8 318 72.6
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.3e-117 425.2 318 71.1
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.3e-117 425.2 318 71.4
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 4.3e-117 425.2 315 72.4
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 7.3e-117 424.5 319 70.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 9.5e-117 424.1 318 71.1
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 9.5e-117 424.1 318 72.0
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 9.5e-117 424.1 318 72.3
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.6e-116 423.3 319 71.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.6e-116 423.3 319 72.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.1e-116 422.9 323 69.0
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.1e-116 422.9 318 72.3
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 8.1e-116 421.0 318 70.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.4e-115 420.2 319 71.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.1e-115 419.1 318 71.4
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.0e-115 418.7 319 70.5
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.0e-115 418.7 319 70.8
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-114 416.8 353 64.6
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 2.6e-114 416.0 320 70.0
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.4e-114 415.2 319 70.2
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 4.9e-113 411.8 318 70.8
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.3e-110 402.9 286 76.9
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.1e-110 401.7 281 76.9
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.9e-109 399.8 270 78.9
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 5.6e-109 398.3 318 67.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 5.6e-109 398.3 319 68.7
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 3.6e-108 395.6 305 70.2
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 4.7e-108 395.2 293 73.0
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 8.1e-108 394.4 318 67.6
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.1e-107 394.0 318 67.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 3.1e-107 392.5 302 69.5
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 6.9e-107 391.3 302 69.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.6e-106 389.4 302 69.2
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 7.6e-106 387.9 304 69.4
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.7e-105 386.7 321 65.4
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 3.2e-104 382.5 256 79.3
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.6e-103 380.2 280 72.1
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.7e-102 376.7 270 74.1
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 2.3e-102 376.3 294 69.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.5e-101 372.9 294 67.7
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 5.6e-101 371.7 320 64.4
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.6e-98 361.3 318 64.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 7.6e-98 361.3 318 66.4
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.7e-97 360.1 264 72.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.7e-97 360.1 230 83.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.8e-97 359.0 318 65.1
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 6.0e-95 351.7 270 68.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.5e-93 346.3 242 76.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.6e-92 343.6 322 61.2
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.7e-92 342.4 323 62.2
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.2e-90 337.4 318 60.7
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.1e-83 312.8 318 55.7
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.8e-82 308.5 229 70.3
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.3e-76 288.5 391 49.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.7e-73 280.4 748 32.5
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.8e-70 270.4 322 50.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.8e-67 260.4 320 48.4
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 3.2e-64 249.6 315 49.8
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.5e-61 240.7 182 76.4
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 5.3e-59 232.3 298 48.7
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.0e-59 231.9 150 86.7
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.8e-52 209.9 193 63.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 6.1e-47 192.2 274 48.5
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.7e-46 188.7 160 68.8
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.8e-44 183.3 122 83.6
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.3e-41 174.5 154 66.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.1e-40 171.4 120 80.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 2.5e-40 170.2 252 43.7
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.8e-36 156.8 115 64.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.8e-35 154.1 275 41.8
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.2e-32 142.1 167 56.9
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 9.5e-32 141.7 311 33.4
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.0e-31 138.7 112 67.0
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.8e-30 137.5 91 74.7
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.9e-30 135.2 111 70.3
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 7.0e-27 125.6 138 58.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 8.6e-25 118.6 100 60.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.9e-24 117.5 93 66.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 6.8e-22 109.0 89 60.7
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.9e-20 102.8 57 89.5
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.1e-14 83.6 394 25.9
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.8e-14 82.4 62 74.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.2e-11 73.6 92 50.0
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 3.6e-07 60.1 90 41.1
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.8e-06 57.8 32 78.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 8.9e-06 55.5 129 34.1


User provided reference genes

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