Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.0e-92 342.4 175 100.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.0e-92 342.4 175 100.0
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 2.7e-65 252.3 176 77.3
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 6.1e-65 251.1 175 78.3
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.8e-64 249.6 179 77.1
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 3.9e-64 248.4 179 77.7
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.7e-64 247.7 177 74.6
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.1e-63 246.9 179 76.0
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-63 246.9 178 75.8
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.5e-63 246.5 175 74.9
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 3.3e-63 245.4 177 74.6
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 4.4e-63 245.0 177 74.6
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 7.4e-63 244.2 175 74.9
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.3e-62 243.4 178 75.3
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.7e-62 243.0 177 74.0
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 2.2e-62 242.7 175 74.9
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 2.2e-62 242.7 179 75.4
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 6.3e-62 241.1 179 73.7
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 6.3e-62 241.1 179 73.7
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 1.4e-61 240.0 179 73.2
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.4e-61 240.0 185 73.0
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.4e-61 239.2 180 73.3
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 5.3e-61 238.0 177 72.3
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 5.3e-61 238.0 178 74.2
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 7.0e-61 237.7 175 72.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 9.1e-61 237.3 178 72.5
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.2e-60 236.9 177 72.3
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 2.0e-60 236.1 177 74.0
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 2.6e-60 235.7 178 73.0
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.6e-60 235.7 179 73.2
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.6e-60 235.7 177 71.8
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 4.5e-60 235.0 178 71.9
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 5.9e-60 234.6 178 74.2
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 2.2e-59 232.6 175 74.3
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 5.0e-59 231.5 179 71.5
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 5.0e-59 231.5 176 72.7
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 5.0e-59 231.5 180 72.8
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.5e-59 231.1 177 69.5
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 6.5e-59 231.1 182 70.9
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 6.5e-59 231.1 175 70.9
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 8.5e-59 230.7 175 71.4
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.9e-58 229.6 180 72.8
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 2.5e-58 229.2 176 71.6
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 5.5e-58 228.0 178 69.1
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 5.5e-58 228.0 175 72.6
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 7.2e-58 227.6 176 71.0
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 7.2e-58 227.6 177 72.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 9.4e-58 227.3 177 69.5
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 9.4e-58 227.3 178 69.1
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 9.4e-58 227.3 175 69.1
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.2e-57 226.9 180 67.8
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 2.1e-57 226.1 180 71.1
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.7e-57 225.7 175 68.0
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 2.7e-57 225.7 178 70.8
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.6e-57 225.3 179 70.4
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.6e-57 225.3 176 72.7
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 6.1e-57 224.6 179 70.9
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 8.0e-57 224.2 181 69.1
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 3.0e-56 222.2 182 70.9
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 4.0e-56 221.9 178 68.5
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.0e-56 221.9 175 70.3
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 5.2e-56 221.5 175 67.4
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 5.2e-56 221.5 176 72.2
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 6.8e-56 221.1 175 69.1
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.2e-55 220.3 175 68.0
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.2e-55 220.3 175 68.6
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.5e-55 219.9 177 70.6
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.5e-55 219.9 180 70.0
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 2.0e-55 219.5 177 68.4
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 4.4e-55 218.4 175 68.0
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 4.4e-55 218.4 175 68.0
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.2e-54 216.1 177 68.4
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 4.8e-54 214.9 175 66.9
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 1.1e-53 213.8 179 67.0
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.4e-53 213.4 175 68.6
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.4e-53 212.6 175 66.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.1e-53 212.2 178 68.0
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 4.1e-53 211.8 173 67.6
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 4.1e-53 211.8 179 69.3
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-52 210.3 177 64.4
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.2e-52 210.3 177 64.4
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 5.9e-52 208.0 182 62.1
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 5.9e-52 208.0 177 63.8
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 5.9e-52 208.0 177 63.8
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 5.9e-52 208.0 176 65.9
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 5.9e-52 208.0 151 71.5
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 7.7e-52 207.6 178 63.5
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.0e-51 207.2 177 63.8
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.3e-51 206.8 178 62.9
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.3e-51 206.8 177 67.8
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.9e-51 205.7 177 62.7
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 3.8e-51 205.3 179 64.2
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 3.8e-51 205.3 178 62.4
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 5.0e-51 204.9 180 63.9
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-50 203.0 177 62.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-49 199.9 180 62.8
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 2.7e-49 199.1 190 61.1
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.6e-49 198.7 177 63.3
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.6e-49 198.7 177 63.3
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 4.7e-49 198.4 176 64.2
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 6.1e-49 198.0 177 63.3
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.0e-48 197.2 175 66.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.0e-48 197.2 175 66.3
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.8e-48 196.4 175 61.7
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 5.2e-48 194.9 176 60.2
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.0e-47 193.0 173 65.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 2.6e-47 192.6 174 59.2
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 3.4e-47 192.2 179 60.9
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 4.4e-47 191.8 175 64.6
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 8.3e-46 187.6 175 65.1
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.8e-45 186.4 175 57.7
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 2.4e-45 186.0 148 73.0
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 5.9e-44 181.4 112 81.2
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 5.9e-44 181.4 181 58.0
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.0e-43 180.6 115 75.7
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 2.1e-41 172.9 110 78.2
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.1e-41 172.9 112 75.0
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 3.6e-41 172.2 151 69.5
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 4.7e-41 171.8 148 68.9
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 4.0e-40 168.7 179 57.0
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 4.0e-40 168.7 179 57.0
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 4.9e-38 161.8 142 59.2
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 7.8e-36 154.5 146 63.0
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 5.0e-35 151.8 147 59.9
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.6e-33 146.7 147 58.5
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 2.0e-31 139.8 82 76.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 5.8e-31 138.3 131 64.9
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-28 130.2 137 52.6
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 5.6e-26 121.7 74 78.4
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 1.2e-25 120.6 74 77.0
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 2.1e-25 119.8 72 79.2
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.1e-25 119.8 175 48.0
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.8e-25 119.4 74 77.0
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 3.1e-24 115.9 105 57.1
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.2e-20 104.0 103 56.3
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.6e-20 102.1 111 58.6
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.3e-19 100.5 80 71.2
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.3e-19 100.5 105 61.0
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 8.1e-17 91.3 74 60.8
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.2e-15 87.4 103 56.3
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 2.9e-14 82.8 88 50.0
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 6.4e-14 81.6 106 46.2
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.9e-13 80.1 86 52.3
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 5.4e-13 78.6 120 50.0
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-10 70.1 105 49.5
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 2.2e-06 56.6 30 80.0


User provided reference genes

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